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Protein Overview: PSD2

General Information:
Name(s) found: PSD2 / YGR170W [SGD]
Description(s) found:
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  • gi|6321609|ref|NP_011686.1| Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine; Psd2p [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S64484 phosphatidylserine decarboxylase (EC 4.1.1.65) 2 precursor - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1706516|sp|P53037.1|PSD2_YEAST RecName: Full=Phosphatidylserine decarboxylase proenzyme 2; Contains: RecName: Full=Phosphatidylserine decarboxylase 2 beta chain; Contains: RecName: Full=Phosphatidylserine decarboxylase 2 alpha chain; Flags: Precursor [NCBI NR]
  • gi|1323300|emb|CAA97196.1| PSD2 [Saccharomyces cerevisiae] [NCBI NR]
  • Phosphatidylserine decarboxylase proenzyme 2 OS=Saccharomyces cerevisiae GN=PSD2 PE=1 SV=1 [Swiss-Prot]
  • PSD2 Phosphatidylserine decarboxylase 2 [mips]
  • Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine [SGD]
  • PSD2, Chr VII from 837137-840553 [yeast_orfs2]
  • Chr VII from 837137-840553 [yeastorf3.fasta]
  • Chr VII from 837144-840560 [yeastorf4.fasta]
  • (P53037) Phosphatidylserine decarboxylase proenzyme 2 precursor (EC 4.1.1.65) [4932.FASTACCERV.txt]
  • PSD2 SGDID:S0003402, Chr VII from 837145-840561, Verified ORF [yeastflysequest.fasta]
  • PSD2 SGDID:S0003402, Chr VII from 837147-840563, Verified ORF [10112005cervSGD.fasta]
  • Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine [Saccharomyces cerevisiae]gi|1323300|emb|CAA97196.1| PSD2 [Saccharomyces cerevisiae]gi|2132390|pir||S64484 phosphatidylserine d [nrdb_11152004_Chlamydomonas]
  • PSD2 SGDID:S000003402, Chr VII from 837147-840563, Verified ORF, "Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • Phosphatidylserine decarboxylase proenzyme 2 precursor [Contains: Phosphatidylserine decarboxylase 2 beta chain; Phosphatidylserine decarboxylase 2 alpha chain] [nr-271106-contam.fasta]
  • PSD2 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine; Psd2p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Phosphatidylserine decarboxylase proenzyme 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSD2 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • PSD2 SGDID:S000003402, Chr VII from 837142-840558, Genome Release 64-1-1, Verified ORF, "Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine" [yeast-030211-contam.fasta]
  • PSD2 SGDID:S000003402, Chr VII from 837142-840558, Genome Release 64-2-1, Verified ORF, "Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes; converts phosphatidylserine to phosphatidylethanolamine; controls vacuolar membrane phospholipid content by regulating phospholipids in compartments that will eventually give rise to the vacuole; loss of Psd2p causes a specific reduction in vacuolar membrane PE levels while total PE levels are not significantly affected" [20141208_orf_trans.fasta]
  • YGR170W SGDID:S000003402, Chr VII from 837142-840558, Genome Release 64-1-1, Verified ORF, "Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 1138 amino acids

    Gene Ontology:
    Cellular Component: fungal-type vacuole membrane [TASLink to PubMed article]
    Golgi membrane [TASLink to PubMed article]
    Biological Process: phosphatidylcholine biosynthetic process [IDALink to PubMed article]
    Molecular Function: phosphatidylserine decarboxylase activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIIKGRKRG KNKKPTLILK IHVIQAENIE ALKTFNCNPV CFVTTNTFYS QKTNKLKNSN  60
   61 THWNQTLRIK LPRNPTSEWL RIIVYDALPT GAPPTTPSRP RTTTANTSSS TLSNSGLSSH 120
  121 SHSSRNLNVT SKGNQTSTSI NSVSSSATPA PSHSSSSLST TGPGSTHKNR INSYLYLGEA 180
  181 KISLLDLFKR KDTTTSYKFS IEAQRYHLYD MKGGKDQDSL NCNFLVGDIL LGFKLECNVK 240
  241 RTPTFQAFNA WRNELNTYLG RIDRNKARMR SSSSLPPPLE DMLSNSSAVS GNEIRREKPY 300
  301 SDTDLAHDEE VNAEDEIDAE ESIEDMNSSG SICTERRYDI DNDTIFDSIS EVVSLNDEEL 360
  361 DILNDFEEAD HPNVPDINVH DIDEDTRISL SSMITALDEY DIVEPEDVAK LPAVSENDIT 420
  421 SVDDEESENQ QESDEEFDIY NEDEREDSDF QSKEYIGSRL LHLQRGKHNK SYANYLYRRA 480
  481 KSNFFISKKE HAMGVVFMHI GAIKNLPALR NRLSKTNYEM DPFIVISFGR RVFKTSWRKH 540
  541 TLNPEFNEYA AFEVFPHETN FAFSIKVVDK DSFSFNDDVA KCELAWFDML QQQQHENEWI 600
  601 PYEIPLDLTV EPAHAPKQPV LYSSFKYVSY PFLKKSFWKE AVDTSVNLER LDIIQVMLYL 660
  661 ERLGSFTMAD SFELFQHFNK SAWAGQSITR SQLVEGLQSW RKSTNFKRIW TCPRCMRSCK 720
  721 PTRNARRSKL VLENDLITHF AICTFSKEHK TLKPSYVSSA FASKRWFSKV LIKLTYGKYA 780
  781 LGSNNANILV QDRDTGIIIE EKISAHVKLG MRIIYNGKSP ESKKFRSLLK TLSIRQGKKF 840
  841 DSTASAKQIE PFIKFHSLDL SQCRDKDFKT FNEFFYRKLK PGSRLPESNN KEILFSPADS 900
  901 RCTVFPTIQE SKEIWVKGRK FSIKKLANNY NPETFNDNNC SIGIFRLAPQ DYHRFHSPCN 960
  961 GTIGKPVYVD GEYYTVNPMA VRSELDVFGE NIRVIIPIDS PQFGKLLYIP IGAMMVGSIL1020
 1021 LTCKENDVVE SGQELGYFKF GGSTIIIIIP HNNFMFDSDL VKNSSERIET LVKVGMSIGH1080
 1081 TSNVNELKRI RIKVDDPKKI ERIKRTISVS DENAKSTGNV TWEYHTLREM MNKDFAGL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) PDR17 PSD2
    View Details Gavin AC, et al. (2006) ECM5 IML1 PSD2 PSH1 YFR006W
    View Details Gavin AC, et al. (2002) BDF2 BEM2 CCM1 CDC55 CKB1 DYN1 ECM16 ECM5 EHD3 FYV4 GEP3 GLY1 HAT1 HAT2 HHF1, HHF2 HIF1 HSC82 HSM3 ICL1 IML1 KAP123 KRE33 LIP2 MAC1 MDN1 MIS1 MRP1 MRP10 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS5 MRPS8 MRPS9 MSB1 NAM9 NIP1 NMD5 PAP2 PET123 PFK1 PRO1 PRT1 PSD2 PSE1 PSH1 PUS7 RIX1 RPA135 RPC40 RPG1 RPN12 RPN3 RPN6 RPN8 RPN9 RPT2 RPT3 RPT5 RPT6 RSC3 RSM10 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 SAM1 TEL1 TIF4631 TSC11 UBP10 USO1 UTP20 UTP22 VTH2 YFR006W YPR077C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen CDC23 PSD2 1 Unpublished Fields Lab Data
    View Screen IST3 PSD2 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..242] ab initio 11.96 No description for 1ldvA was found.
    2 View Details [243..368] deduced N/A No confident structure predictions are available.
    3 View Details [369..482] PSI-BLAST 106.0 Synaptogamin I
    4 View Details [483..643] PSI-BLAST 106.0 Synaptogamin I
    5 View Details [644..817] PSI-BLAST 27.0 Synaptogamin I
    6 View Details [818..1138] MSA 22.059992 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.76

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle