Protein: | PSD2 |
Organism: | Saccharomyces cerevisiae |
Length: | 1138 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD2.
Description | E-value | Query Range |
Subject Range |
|
1163.0 | [0..1] | [1138..1] |
|
549.0 | [0..462] | [1129..554] |
|
549.0 | [0..436] | [1138..307] |
|
516.0 | [0..490] | [1130..388] |
|
479.0 | [0..457] | [1079..4] |
|
417.0 | [0..320] | [1087..200] |
|
403.0 | [0..416] | [1111..239] |
Region A: Residues: [1-242] |
1 11 21 31 41 51 | | | | | | 1 MRIIKGRKRG KNKKPTLILK IHVIQAENIE ALKTFNCNPV CFVTTNTFYS QKTNKLKNSN 60 61 THWNQTLRIK LPRNPTSEWL RIIVYDALPT GAPPTTPSRP RTTTANTSSS TLSNSGLSSH 120 121 SHSSRNLNVT SKGNQTSTSI NSVSSSATPA PSHSSSSLST TGPGSTHKNR INSYLYLGEA 180 181 KISLLDLFKR KDTTTSYKFS IEAQRYHLYD MKGGKDQDSL NCNFLVGDIL LGFKLECNVK 240 241 RT |
Region A: Residues: [243-368] |
1 11 21 31 41 51 | | | | | | 1 PTFQAFNAWR NELNTYLGRI DRNKARMRSS SSLPPPLEDM LSNSSAVSGN EIRREKPYSD 60 61 TDLAHDEEVN AEDEIDAEES IEDMNSSGSI CTERRYDIDN DTIFDSISEV VSLNDEELDI 120 121 LNDFEE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [369-482] |
1 11 21 31 41 51 | | | | | | 1 ADHPNVPDIN VHDIDEDTRI SLSSMITALD EYDIVEPEDV AKLPAVSEND ITSVDDEESE 60 61 NQQESDEEFD IYNEDEREDS DFQSKEYIGS RLLHLQRGKH NKSYANYLYR RAKS |
Detection Method: | ![]() |
Confidence: | 106.0 |
Match: | 1dqvA |
Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [483-643] |
1 11 21 31 41 51 | | | | | | 1 NFFISKKEHA MGVVFMHIGA IKNLPALRNR LSKTNYEMDP FIVISFGRRV FKTSWRKHTL 60 61 NPEFNEYAAF EVFPHETNFA FSIKVVDKDS FSFNDDVAKC ELAWFDMLQQ QQHENEWIPY 120 121 EIPLDLTVEP AHAPKQPVLY SSFKYVSYPF LKKSFWKEAV D |
Detection Method: | ![]() |
Confidence: | 106.0 |
Match: | 1dqvA |
Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [644-817] |
1 11 21 31 41 51 | | | | | | 1 TSVNLERLDI IQVMLYLERL GSFTMADSFE LFQHFNKSAW AGQSITRSQL VEGLQSWRKS 60 61 TNFKRIWTCP RCMRSCKPTR NARRSKLVLE NDLITHFAIC TFSKEHKTLK PSYVSSAFAS 120 121 KRWFSKVLIK LTYGKYALGS NNANILVQDR DTGIIIEEKI SAHVKLGMRI IYNG |
Detection Method: | ![]() |
Confidence: | 27.0 |
Match: | 1bynA |
Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [818-1138] |
1 11 21 31 41 51 | | | | | | 1 KSPESKKFRS LLKTLSIRQG KKFDSTASAK QIEPFIKFHS LDLSQCRDKD FKTFNEFFYR 60 61 KLKPGSRLPE SNNKEILFSP ADSRCTVFPT IQESKEIWVK GRKFSIKKLA NNYNPETFND 120 121 NNCSIGIFRL APQDYHRFHS PCNGTIGKPV YVDGEYYTVN PMAVRSELDV FGENIRVIIP 180 181 IDSPQFGKLL YIPIGAMMVG SILLTCKEND VVESGQELGY FKFGGSTIII IIPHNNFMFD 240 241 SDLVKNSSER IETLVKVGMS IGHTSNVNEL KRIRIKVDDP KKIERIKRTI SVSDENAKST 300 301 GNVTWEYHTL REMMNKDFAG L |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.