| Protein: | PSD2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1138 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD2.
| Description | E-value | Query Range |
Subject Range |
|
|
1163.0 | [0..1] | [1138..1] |
|
|
549.0 | [0..462] | [1129..554] |
|
|
549.0 | [0..436] | [1138..307] |
|
|
516.0 | [0..490] | [1130..388] |
|
|
479.0 | [0..457] | [1079..4] |
|
|
417.0 | [0..320] | [1087..200] |
|
|
403.0 | [0..416] | [1111..239] |
|
Region A: Residues: [1-242] |
1 11 21 31 41 51
| | | | | |
1 MRIIKGRKRG KNKKPTLILK IHVIQAENIE ALKTFNCNPV CFVTTNTFYS QKTNKLKNSN 60
61 THWNQTLRIK LPRNPTSEWL RIIVYDALPT GAPPTTPSRP RTTTANTSSS TLSNSGLSSH 120
121 SHSSRNLNVT SKGNQTSTSI NSVSSSATPA PSHSSSSLST TGPGSTHKNR INSYLYLGEA 180
181 KISLLDLFKR KDTTTSYKFS IEAQRYHLYD MKGGKDQDSL NCNFLVGDIL LGFKLECNVK 240
241 RT
|
| Detection Method: |  |
| Confidence: | 11.96 |
| Match: | |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [243-368] |
1 11 21 31 41 51
| | | | | |
1 PTFQAFNAWR NELNTYLGRI DRNKARMRSS SSLPPPLEDM LSNSSAVSGN EIRREKPYSD 60
61 TDLAHDEEVN AEDEIDAEES IEDMNSSGSI CTERRYDIDN DTIFDSISEV VSLNDEELDI 120
121 LNDFEE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.305 | a.74.1 | Cyclin-like |
| View | Download | 0.305 | a.74.1 | Cyclin-like |
| View | Download | 0.298 | a.118.1 | ARM repeat |
| View | Download | 0.298 | a.118.22 | Description not found. |
| View | Download | 0.292 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.292 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.269 | a.186.1 | Description not found. |
|
Region A: Residues: [369-482] |
1 11 21 31 41 51
| | | | | |
1 ADHPNVPDIN VHDIDEDTRI SLSSMITALD EYDIVEPEDV AKLPAVSEND ITSVDDEESE 60
61 NQQESDEEFD IYNEDEREDS DFQSKEYIGS RLLHLQRGKH NKSYANYLYR RAKS
|
| Detection Method: | |
| Confidence: | 106.0 |
| Match: | 1dqvA |
| Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [483-643] |
1 11 21 31 41 51
| | | | | |
1 NFFISKKEHA MGVVFMHIGA IKNLPALRNR LSKTNYEMDP FIVISFGRRV FKTSWRKHTL 60
61 NPEFNEYAAF EVFPHETNFA FSIKVVDKDS FSFNDDVAKC ELAWFDMLQQ QQHENEWIPY 120
121 EIPLDLTVEP AHAPKQPVLY SSFKYVSYPF LKKSFWKEAV D
|
| Detection Method: | |
| Confidence: | 106.0 |
| Match: | 1dqvA |
| Description: | Synaptogamin I |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [644-817] |
1 11 21 31 41 51
| | | | | |
1 TSVNLERLDI IQVMLYLERL GSFTMADSFE LFQHFNKSAW AGQSITRSQL VEGLQSWRKS 60
61 TNFKRIWTCP RCMRSCKPTR NARRSKLVLE NDLITHFAIC TFSKEHKTLK PSYVSSAFAS 120
121 KRWFSKVLIK LTYGKYALGS NNANILVQDR DTGIIIEEKI SAHVKLGMRI IYNG
|
| Detection Method: | |
| Confidence: | 27.0 |
| Match: | 1bynA |
| Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [818-1138] |
1 11 21 31 41 51
| | | | | |
1 KSPESKKFRS LLKTLSIRQG KKFDSTASAK QIEPFIKFHS LDLSQCRDKD FKTFNEFFYR 60
61 KLKPGSRLPE SNNKEILFSP ADSRCTVFPT IQESKEIWVK GRKFSIKKLA NNYNPETFND 120
121 NNCSIGIFRL APQDYHRFHS PCNGTIGKPV YVDGEYYTVN PMAVRSELDV FGENIRVIIP 180
181 IDSPQFGKLL YIPIGAMMVG SILLTCKEND VVESGQELGY FKFGGSTIII IIPHNNFMFD 240
241 SDLVKNSSER IETLVKVGMS IGHTSNVNEL KRIRIKVDDP KKIERIKRTI SVSDENAKST 300
301 GNVTWEYHTL REMMNKDFAG L
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
