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Protein Overview: PDB1

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run SEC10 No Comments De Craene, J., et al. (2006)
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run MIH1 experimental2 - mih1-2 McCusker D, et al (2007)
View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
View Run VAM3 sample: hx3 Hao Xu, et al. (2010)
View Run VAM3 sample: hx4 Hao Xu, et al. (2010)
View Run VAM3 Sample: HX11 - both fusion and trans-SNARE complex formation take place. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX12 - trans-SNARE complex formation and fusion are inhibited (control). Hao Xu, et al. (2010)
View Run VAM3 Sample: HX13 - trans-SNARE complex forms but fusion is blocked. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX14 - mixture in detergent (control). Hao Xu, et al. (2010)
View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data PDB1 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..231] PSI-BLAST 626.855515 E1-beta subunit of pyruvate dehydrogenase, Pyr module; E1-beta subunit of pyruvate dehydrogenase, C-domain
2 View Details [232..366] PSI-BLAST 626.855515 E1-beta subunit of pyruvate dehydrogenase, Pyr module; E1-beta subunit of pyruvate dehydrogenase, C-domain

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • pyruvate dehydrogenase activity
  • 11.3856674722026 bayes_pls_golite062009
  • pyruvate dehydrogenase (acetyl-transferring) activity
  • 11.0549577473177 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
  • 10.8180381281695 bayes_pls_golite062009
  • 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
  • 7.00951713446616 bayes_pls_golite062009
  • alpha-ketoacid dehydrogenase activity
  • 6.25236550086321 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
  • 5.65146926050423 bayes_pls_golite062009
  • acetolactate synthase activity
  • 4.51986503762195 bayes_pls_golite062009
  • cyclin-dependent protein kinase 5 activator regulator activity
  • 3.00128844859152 bayes_pls_golite062009
  • 2-oxoisovalerate dehydrogenase (acylating) activity
  • 3.00128844859152 bayes_pls_golite062009
  • transferase activity, transferring aldehyde or ketonic groups
  • 2.21959520697519 bayes_pls_golite062009
  • transketolase activity
  • 2.20554088536433 bayes_pls_golite062009
  • transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
  • 0.667418924427388 bayes_pls_golite062009
  • binding
  • 0.551586872853971 bayes_pls_golite062009
  • catalytic activity
  • 0.545407789079971 bayes_pls_golite062009
  • oxidoreductase activity
  • 0.281475773435032 bayes_pls_golite062009
  • pyruvate decarboxylase activity
  • 0.198062360371269 bayes_pls_golite062009
    2 No functions predicted.




    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend

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