| Protein: | PDB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 366 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..366] | [1..366] |
|
|
0.0 | [34..364] | [7..337] |
|
|
0.0 | [5..365] | [7..359] |
|
|
0.0 | [39..366] | [34..361] |
|
Region A: Residues: [1-231] |
1 11 21 31 41 51
| | | | | |
1 MFSRLPTSLA RNVARRAPTS FVRPSAAAAA LRFSSTKTMT VREALNSAMA EELDRDDDVF 60
61 LIGEEVAQYN GAYKVSKGLL DRFGERRVVD TPITEYGFTG LAVGAALKGL KPIVEFMSFN 120
121 FSMQAIDHVV NSAAKTHYMS GGTQKCQMVF RGPNGAAVGV GAQHSQDFSP WYGSIPGLKV 180
181 LVPYSAEDAR GLLKAAIRDP NPVVFLENEL LYGESFEISE EALSPEFTLP Y
|
| Detection Method: |  |
| Confidence: | 626.855515 |
| Match: | 1ik6A_ |
| Description: | E1-beta subunit of pyruvate dehydrogenase, Pyr module; E1-beta subunit of pyruvate dehydrogenase, C-domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [232-366] |
1 11 21 31 41 51
| | | | | |
1 KAKIEREGTD ISIVTYTRNV QFSLEAAEIL QKKYGVSAEV INLRSIRPLD TEAIIKTVKK 60
61 TNHLITVEST FPSFGVGAEI VAQVMESEAF DYLDAPIQRV TGADVPTPYA KELEDFAFPD 120
121 TPTIVKAVKE VLSIE
|
| Detection Method: | |
| Confidence: | 626.855515 |
| Match: | 1ik6A_ |
| Description: | E1-beta subunit of pyruvate dehydrogenase, Pyr module; E1-beta subunit of pyruvate dehydrogenase, C-domain |
| Matching Structure (courtesy of the PDB): |
|
