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Protein Overview: YBL104C

General Information:
Name(s) found: YBL104C [SGD]
Description(s) found:
Found 17 descriptions.
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  • Putative protein of unknown function, promoter contains multiple GCN4 binding sites [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 1038 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLIKKVTHW SYDNLIDYLS VNPTRDEVTH YKVDPENESD ESIIKLHTVK DFGSITCLDY  60
   61 SESEIGMIGV GEKNGYLRIF NISGQNSSSP ASHAPVGLNA NNETSMTNAS GGKAAQAENI 120
  121 VGSVSNLKDT QGYPVSETNY DIRVRAKKQR CINSLGINTN GLIAMGLDRN KHDSSLQIWD 180
  181 MNYHDDSHET INPMFSYCTN ESIVSLKFLN DTSVLAASTK FLKEIDVRSP NPIYQHPTRL 240
  241 TYDIKLNPFN DWQFSTYGDD GTLAIWDRRK LSDQASLGDL NVASPLLTFE KLVGSGAASR 300
  301 KYMNSCFRWS CVRNNEFATL HRGDTIKRWR LGYYCDSNRD IAADDDNEMN IENLFVSSVH 360
  361 DTNTMYDRVA TFDYIPRSNN GTSLICMRQS GTIYRMPISE VCSKAILNNR NSLLLSNFEN 420
  421 TEIDEIRVNN EHEKSNLENV KTILKNLSFE DLDVSEDYFP SGHDEPNNEI EYSELSEEEN 480
  481 EGSNDVLDSK RGFELFWKPE KLLEKDISVI MRTRASLGYG LDPMNTVEMI DSSKNLQNNA 540
  541 YIRNTWRWIA IAKASVDDGT MVSGDLDLGY EGVIGIWNGI NGISNQDRYR QETILSDKQL 600
  601 NKEMEKIIKL RRKNRDRNSP IANAAGSPKY VQRRLCLIIS GWDLSRSDYE DKYNIIMKNG 660
  661 HYEKAAAWAV FFGDIPKAVE ILGSAKKERL RLIATAIAGY LAYKDLPGNN AWRQQCRKMS 720
  721 SELDDPYLRV IFAFIADNDW WDILYEPAIS LRERLGVALR FLNDTDLTTF LDRTSSTVIE 780
  781 NGELEGLILT GITPNGIDLL QSYVNKTSDV QSAALISIFG SPRYFRDQRV DEWIQTYRDM 840
  841 LKSWELFSMR ARFDVLRSKL SRTKTGVLTA DIKPRQIYIQ CQNCKQNINT PRTSSPSSAV 900
  901 STSAGNYKNG EAYRRNNADY KKFNTGSSEA QAADEKPRHK YCCPHCGSSF PRCAICLMPL 960
  961 GTSNLPFVIN GTQSRDPMQT EDSQDGANRE LVSRKLKLNE WFSFCLSCNH GMHAGHAEEW1020
 1021 FDRHNVCPTP GCTCQCNK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) AHA1 BUD3 CNS1 CPR6 DIG2 DNM1 DSF1, YNR073C FRT2 GPA2 HOM6 HSC82 HSP104 HSP82 MBB1 MRPL50 PAM1 PPT1 QNS1 RMD8 RTS1 SMT3 STI1 STP4 TDH1 UTP20 YBL104C
    View Details Gavin AC, et al. (2006) CIN1 YBL104C
    View Details Gavin AC, et al. (2002) BLM10 CDC55 CIN1 ERG13 GUS1 HHF1, HHF2 HOS2 HOS4 IML1 KAP95 KEL1 LTE1 MYO5 PFK1 PPH21 PPH22 PRE1 PRE10 PRE2 PRE4 PRE5 PRE6 PRE7 PRE8 PRE9 PUP1 PUP2 PUP3 RRD2 RTS1 RTS3 SCL1 SET3 SIF2 SNT1 SRP1 TDH2 TDH3 TEF4 TPD3 YBL104C YOR1 YRA1 ZDS1 ZDS2
    View Details Ho Y, et al. (2002) APM1 BMS1 BUD9 CDC53 CIC1 COF1 CTF4 DAK2 DBP10 DED81 DIA2 ENP1 FPR3 ILS1 KRE33 KRE6 KRI1 LST4 MCM2 MCM3 MCM5 NIP7 NMD3 NOP12 OMS1 RPN1 RRP12 SEH1 SKP1 SLT2 SPB1 SSF1 SSF2 SSZ1 THI22 TIF6 UFD4 URB1 UTP10 VMA6 YAK1 YBL104C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run VAM3 Sample: HX12 - trans-SNARE complex formation and fusion are inhibited (control). Hao Xu, et al. (2010)
    View Run VAM3 hx23: mixture in detergent (control) Investigating Vam3p, Nyv1p and their partners in trans-SNARE complex Hao Xu, et al. (2010)
    View Run MLP2 #26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2 Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen SCL1 YBL104C 1 Unpublished Fields Lab Data
    View Screen MET30 YBL104C 1 Unpublished Fields Lab Data
    View Screen YLR224W YBL104C 1 Unpublished Fields Lab Data
    View Screen RAD1 YBL104C 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YBL104C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..477] PSI-BLAST 37.39794 Actin interacting protein 1
    2 View Details [478..621] deduced N/A No confident structure predictions are available.
    3 View Details [622..738] deduced N/A No confident structure predictions are available.
    4 View Details [739..807] deduced N/A No confident structure predictions are available.
    5 View Details [808..1038] FFAS03 3.72 No description for 2i13A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.407313201902664 bayes_pls_golite062009
  • protein binding
    		•  0.0109071915022965 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle