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Protein Overview: VAS1

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run NSE5 No Comments Hazbun TR, et al. (2003)
View Run DAD1 Dam1-765 complex purified from yeast with Dad1-TAP Shimogawa MM, et al. (2006)
View Run ASF1 3829 - low filter Green EM, et al (2005)
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen UBC7 VAS1 1 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data VAS1 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..121] MSA 1.017968 View MSA. No confident structure predictions are available.
2 View Details [122..169]
[196..218]
[693..945]
PSI-BLAST 2610.0 Valyl-tRNA synthetase (ValRS) C-terminal domain; Valyl-tRNA synthetase (ValRS)
3 View Details [170..195]
[219..357]
[505..692]
[946..1104]
PSI-BLAST 2610.0 Valyl-tRNA synthetase (ValRS) C-terminal domain; Valyl-tRNA synthetase (ValRS)
4 View Details [358..504] PSI-BLAST 2610.0 Valyl-tRNA synthetase (ValRS) C-terminal domain; Valyl-tRNA synthetase (ValRS)

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 8.24066297904343 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 8.24066297904343 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 8.23006189348918 bayes_pls_golite062009
  • valine-tRNA ligase activity
  • 7.13767629265822 bayes_pls_golite062009
  • leucine-tRNA ligase activity
  • 7.03538514482698 bayes_pls_golite062009
  • ligase activity
  • 6.98979325804867 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
  • 6.38633897147986 bayes_pls_golite062009
  • methionine-tRNA ligase activity
  • 2.56893064485672 bayes_pls_golite062009
  • catalytic activity
  • 2.26766689929461 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
  • 1.88984817882585 bayes_pls_golite062009
  • arginine-tRNA ligase activity
  • 1.51931993626103 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
  • 1.14187887833901 bayes_pls_golite062009
  • binding
  • 0.987705174689351 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
  • 0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.625793556381714 bayes_pls_golite062009
  • nucleic acid binding
  • 0.514662028202085 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 0.2293846471193 bayes_pls_golite062009
  • protein binding
  • 0.143518788844143 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
  • 0.118292082006187 bayes_pls_golite062009
  • RNA binding
  • 0.0208852714448815 bayes_pls_golite062009
  • mRNA binding
  • 2.82524485163416E-5 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle