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Protein Overview: PMS1

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data PMS1 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..403] PSI-BLAST 68.39794 DNA mismatch repair protein PMS2
2 View Details [404..590] MSA 4.434992 View MSA. No confident structure predictions are available.
3 View Details [591..733] MSA 1.139986 View MSA. No confident structure predictions are available.
4 View Details [734..826] deduced N/A No confident structure predictions are available.
5 View Details [827..873] MSA 3.062993 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • mismatched DNA binding
  • 8.69038541722775 bayes_pls_golite062009
  • DNA insertion or deletion binding
  • 7.03361327424191 bayes_pls_golite062009
  • 6.04882684441736 bayes_pls_golite062009
  • guanine/thymine mispair binding
  • 5.8954303695758 bayes_pls_golite062009
  • mismatch repair complex binding
  • 5.63566878749852 bayes_pls_golite062009
  • single base insertion or deletion binding
  • 5.36719395837475 bayes_pls_golite062009
  • dinucleotide insertion or deletion binding
  • 4.91072939712457 bayes_pls_golite062009
  • loop DNA binding
  • 4.26052361441101 bayes_pls_golite062009
  • DNA topoisomerase (ATP-hydrolyzing) activity
  • 2.66323092512867 bayes_pls_golite062009
  • DNA topoisomerase activity
  • 2.35776058207527 bayes_pls_golite062009
  • protein kinase activity
  • 2.13536672517084 bayes_pls_golite062009
  • catalytic activity
  • 2.10890475146569 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 1.77725015786603 bayes_pls_golite062009
  • kinase activity
  • 1.68443268281997 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
  • 1.64025200399404 bayes_pls_golite062009
  • transcription regulator activity
  • 1.37978051130887 bayes_pls_golite062009
  • DNA binding
  • 1.31521246060081 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.22640171545155 bayes_pls_golite062009
  • nucleic acid binding
  • 1.22084067619837 bayes_pls_golite062009
  • transferase activity
  • 1.09369139087478 bayes_pls_golite062009
  • exonuclease activity
  • 1.02947145936572 bayes_pls_golite062009
  • molecular transducer activity
  • 0.996368427522977 bayes_pls_golite062009
  • signal transducer activity
  • 0.996368427522977 bayes_pls_golite062009
  • double-stranded DNA binding
  • 0.91402301750067 bayes_pls_golite062009
  • binding
  • 0.908938377164829 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 0.86218415868631 bayes_pls_golite062009
  • MutSalpha complex binding
  • 0.8423412194292 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.839521076707668 bayes_pls_golite062009
  • ribonuclease activity
  • 0.75307991342421 bayes_pls_golite062009
  • structural constituent of ribosome
  • 0.71251019785001 bayes_pls_golite062009
  • nuclease activity
  • 0.69721312877891 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 0.48105441429954 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 0.477960254167 bayes_pls_golite062009
  • structural molecule activity
  • 0.41673693977319 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 0.36703663415044 bayes_pls_golite062009
  • exoribonuclease activity
  • 0.350394896843651 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle