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Protein Overview: MSS116

General Information:
Name(s) found: MSS116 / YDR194C [SGD]
Description(s) found:
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  • pir||S02116 RNA helicase MSS116 - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|755787|emb|CAA88707.1| Mss116p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|6320400|ref|NP_010480.1| DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing; Mss116p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|127324|sp|P15424.1|MS116_YEAST RecName: Full=ATP-dependent RNA helicase MSS116, mitochondrial; Flags: Precursor [NCBI NR]
  • (P15424) ATP-dependent RNA helicase MSS116, mitochondrial precursor [Swiss-Prot]
  • ATP-dependent RNA helicase MSS116, mitochondrial OS=Saccharomyces cerevisiae GN=MSS116 PE=1 SV=1 [Swiss-Prot]
  • MSS116 RNA helicase of the DEAD box family, mitochondrial [mips]
  • DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing [SGD]
  • MSS116, Chr IV from 845944-847938, reverse complement [yeast_orfs2]
  • Chr IV from 845944-847938, reverse complement [yeastorf3.fasta]
  • Chr IV from 847938-845944, reverse complement [yeastorf5.fasta]
  • MSS116 SGDID:S0002602, Chr IV from 847939-845945, reverse complement, Verified ORF [yeastflysequest.fasta]
  • MSS116 SGDID:S0002602, Chr IV from 847941-845947, reverse complement, Verified ORF [10112005cervSGD.fasta]
  • Mitochondrial RNA helicase of the DEAD box family, necessary for splicing of several mitochondrial introns [Saccharomyces cerevisiae]gi|755787|emb|CAA88707.1| Mss116p [Saccharomyces cerevisiae]gi|127324|sp|P15424|MS16_YEAST ATP-dependent RNA helicase MS [nrdb_11152004_Chlamydomonas]
  • MSS116 SGDID:S000002602, Chr IV from 847941-845947, reverse complement, Verified ORF, "DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; presumed RNA helicase due to DEAD-box motif" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • MSS116 SGDID:S000002602, Chr IV from 847943-845949, reverse complement, Verified ORF, "DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing" [yeast-contam.fasta]
  • MSS116 SGDID:S000002602, Chr IV from 847944-845950, reverse complement, Verified ORF, "DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • Mss116p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing; Mss116p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • ATP-dependent RNA helicase MSS116, mitochondrial precursor [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • ATP-dependent RNA helicase MSS116, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSS116 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • MSS116 SGDID:S000002602, Chr IV from 847946-845952, Genome Release 64-1-1, reverse complement, Verified ORF, "DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing" [yeast-030211-contam.fasta]
  • MSS116 SGDID:S000002602, Chr IV from 847946-845952, Genome Release 64-2-1, reverse complement, Verified ORF, "Mitochondrial transcription elongation factor; DEAD-box protein; required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing; promotes RNA folding by stabilizing an early assembly intermediate" [20141208_orf_trans.fasta]
  • YDR194C SGDID:S000002602, Chr IV from 847946-845952, Genome Release 64-1-1, reverse complement, Verified ORF, "DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 664 amino acids

    Gene Ontology:
    Cellular Component: mitochondrial matrix [IMPLink to PubMed article]
    mitochondrion [IDALink to PubMed article]
    Biological Process: RNA splicing [IDALink to PubMed article][IMPLink to PubMed article]
    Molecular Function: RNA binding [IDALink to PubMed article]
    RNA-dependent ATPase activity [IDALink to PubMed article]
    ATP-dependent RNA helicase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTSILIKGR TPVLASRNLL AALSNCNHIT WAVSRRLYND GNRDQRNFGR NQRNNNSNRY  60
   61 RNSRFNSRPR TRSREDDDEV HFDKTTFSKL IHVPKEDNSK EVTLDSLLEE GVLDKEIHKA 120
  121 ITRMEFPGLT PVQQKTIKPI LSSEDHDVIA RAKTGTGKTF AFLIPIFQHL INTKFDSQYM 180
  181 VKAVIVAPTR DLALQIEAEV KKIHDMNYGL KKYACVSLVG GTDFRAAMNK MNKLRPNIVI 240
  241 ATPGRLIDVL EKYSNKFFRF VDYKVLDEAD RLLEIGFRDD LETISGILNE KNSKSADNIK 300
  301 TLLFSATLDD KVQKLANNIM NKKECLFLDT VDKNEPEAHE RIDQSVVISE KFANSIFAAV 360
  361 EHIKKQIKER DSNYKAIIFA PTVKFTSFLC SILKNEFKKD LPILEFHGKI TQNKRTSLVK 420
  421 RFKKDESGIL VCTDVGARGM DFPNVHEVLQ IGVPSELANY IHRIGRTARS GKEGSSVLFI 480
  481 CKDELPFVRE LEDAKNIVIA KQEKYEPSEE IKSEVLEAVT EEPEDISDIV ISLISSYRSC 540
  541 IKEYRFSERR ILPEIASTYG VLLNDPQLKI PVSRRFLDKL GLSRSPIGKA MFEIRDYSSR 600
  601 DGNNKSYDYD DDSEISFRGN KNYNNRSQNR DYDDEPFRRS NNNRRSFSRS NDKNNYSSRN 660
  661 SNIY

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) CBF5 KRI1 MSS116 RPF2 TIF4631
    View Details (MIPS) Mewes HW, et al. (2004) BI4 CBP6 MRS1 MRS2 MRS3 MRS4 MSS1 MSS116 MSS18 MTF2 NAM2 PET54 TIM10
    View Details Ho Y, et al. (2002) CBF5 CBP2 CCM1 CDC33 CIC1 CKA1 CKA2 CKB1 DBP7 DRS1 EBP2 ECM10 ELA1 ENP2 ERB1 ESF1 ESF2 EST1 GBP2 HAS1 HMO1 HSH49 HTB1 HTB2 IMD1 IMD3 IMD4 ISA1 KAP95 KRE33 KRI1 KRR1 LAA1 LHP1 LSP1 MAK5 MGM101 MIG1 MNP1 MRM1 MSS116 NOC2 NOG1 NOP1 NOP12 NOP13 NOP2 NOP4 NOP58 NOP6 NOP7 NPL3 NUG1 PDI1 PET127 PIL1 PMA1 POL5 PRP43 PUF6 PWP1 RLI1 RPF2 RRP1 RRP12 RRP5 TIF1, TIF2 TIF4631 TIF6 TIS11 TRA1 TSR1 URB1 URB2 UTP10 UTP20 UTP22 YAK1 YCR087W YDR102C YER077C YPP1 YRA1 YTM1
    View Details Qiu et al. (2008) MRS3 MSS116 PET54 SUV3

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
    View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen PRR1 MSS116 1 Unpublished Fields Lab Data
    View Screen UBC7 MSS116 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data MSS116 Huh WK, et al. (2003)
    View Data MSS116 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] deduced N/A No confident structure predictions are available.
    2 View Details [102..337] PSI-BLAST 433.0103 Putative DEAD box RNA helicase
    3 View Details [338..494] PSI-BLAST 433.0103 Putative DEAD box RNA helicase
    4 View Details [495..664] PSI-BLAST 10.0 Nucleotide excision repair enzyme UvrB


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle