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Protein Overview: RIM1

General Information:
Name(s) found: RIM1 / YCR028C-A [SGD]
Description(s) found:
Found 31 descriptions.
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  • Single-stranded DNA-binding protein essential for mitochondrial genome maintenance; involved in mitochondrial DNA replication [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 135 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed articleLink to PubMed articleLink to PubMed article]
    mitochondrial nucleoid [IDALink to PubMed article]
    Biological Process: mitochondrial genome maintenance [IMPLink to PubMed article]
    Molecular Function: single-stranded DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLRTQARFF HATTKKMDFS KMSIVGRIGS EFTEHTSANN NRYLKYSIAS QPRRDGQTNW  60
   61 YNITVFNEPQ INFLTEYVRK GALVYVEADA ANYVFERDDG SKGTTLSLVQ KDINLLKNGK 120
  121 KLEDAEGQEN AASSE

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) RAD52 RFA1 RFA2 RFA3 RIM1
    View Details Krogan NJ, et al. (2006) APN2 BFR1 BRX1 BUR2 LOC1 NHP6A PRK1 RIM1 SGV1 SPB1 TMA64 TSR1
    View Details Gavin AC, et al. (2002) ADH1 CMR1 DNA2 HDA1 HDA2 HDA3 HSC82 KAP95 LCD1 MEC1 MGM101 MIR1 MLH1 MPH1 MSH2 MSH3 MSH6 OLA1 PDC1 PEP4 PGK1 PMS1 PRO2 RAD16 RAD52 RFA1 RFA2 RFA3 RIM1 RNH1 RSC8 RVB2 SGS1 SHS1 TDH3 TIF1, TIF2 TOP3 VAS1 VMA4 VPS1 WRS1 YHR122W YMR315W
    View Details Qiu et al. (2008) ABF2 RIM1 RPO41 YHM2

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RLF2 cac1: TAP-tagged Green EM, et al (2005)
    View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
    View Run MLP2 #08 Alpha Factor Prep4-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data RIM1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] PSI-BLAST 33.154902 ssDNA-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.69275272183315 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  2.3572495084765 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  2.34831682853439 bayes_pls_golite062009
  • binding
    		•  2.25744085310968 bayes_pls_golite062009
  • DNA binding
    		•  1.97161900822354 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.39029069959347 bayes_pls_golite062009
  • structural molecule activity
    		•  1.10843643894126 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.377540062296145 bayes_pls_golite062009
  • protein binding
    		•  0.360033745054291 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.35415853560434 bayes_pls_golite062009
  • translation regulator activity
    		•  0.31332179848255 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.263197317040851 bayes_pls_golite062009
  • nuclease activity
    		•  0.192509675054684 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.157816897728538 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle