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Protein Overview: YDJ1

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Riffle et al. (2010) (Unpublished Data) RPS3 URA2 VMA2 YDJ1
View Details Gavin AC, et al. (2002) ASC1 CLU1 ECM29 GCN1 GCN20 MET18 RAD3 RPN10 RPT3 RPT6 TFP1 TUB3 YDJ1

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run SLI15 No Comments Cheeseman IM, et al. (2002)
View Run TOR1 No Comments Reinke A, et al. (2004)
View Run KIP3 No Comments Cheeseman IM, et al. (2002)
View Run TOR1 No Comments Reinke A, et al. (2004)
View Run TOR2 No Comments Reinke A, et al. (2004)
View Run ALG13 No Comments Hazbun TR, et al. (2003)
View Run PGA1 No Comments Hazbun TR, et al. (2003)
View Run MIA40 No Comments Hazbun TR, et al. (2003)
View Run LST8 No Comments Reinke A, et al. (2004)
View Run TOR2 No Comments Reinke A, et al. (2004)
View Run KOG1 No Comments Reinke A, et al. (2004)
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run HIR2 No Comments Green EM, et al (2005)
View Run DAD1 Dam1-765 complex purified from yeast with Dad1-TAP Shimogawa MM, et al. (2006)
View Run ASF1 3908: TAP-tagged, includes hir2(delta) in background Green EM, et al (2005)
View Run ASF1 3912: TAP-tagged, strain background includes hpc2(delta) Green EM, et al (2005)
View Run RLF2 cac1: TAP-tagged Green EM, et al (2005)
View Run ASF1 sample 3928 - Asf1-S-TEV-ZZ (in hir3delta mutant) Green EM, et al (2005)
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
View Run MLP2 #19 Asynchronous Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2 Keck JM, et al. (2011)
View Run MLP2 #27 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps3-5 Keck JM, et al. (2011)
View Run MLP2 #22 Asynchronous Prep2-IMAC Phosphopeptide enrichment B1-2 Keck JM, et al. (2011)
View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)
View Run MLP2 #06 Alpha Factor Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #19b Asynchronous Prep1-new search criteria Keck JM, et al. (2011)
View Run None Entered #17 Mitotic Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #19a Asynchronous Prep1-new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data YDJ1 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..112] PSI-BLAST 193.228787 HSP40
2 View Details [113..196] PSI-BLAST 18.0 Cysteine-rich domain of the chaperone protein DnaJ.
3 View Details [197..255] PSI-BLAST 146.315398 Heat shock protein 40 Sis1
4 View Details [256..409] PSI-BLAST 146.315398 Heat shock protein 40 Sis1

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • unfolded protein binding
  • 3.04403163860617 bayes_pls_golite062009
  • chaperone binding
  • 2.86745334638583 bayes_pls_golite062009
  • protein binding
  • 2.65982681685488 bayes_pls_golite062009
  • binding
  • 2.63138872417193 bayes_pls_golite062009
  • heat shock protein binding
  • 2.17994194200939 bayes_pls_golite062009
  • transcription regulator activity
  • 1.91297632253219 bayes_pls_golite062009
  • nucleic acid binding
  • 1.6342534817623 bayes_pls_golite062009
  • DNA binding
  • 1.55234338199368 bayes_pls_golite062009
  • Hsp70 protein binding
  • 0.541755903922701 bayes_pls_golite062009
  • transferase activity
  • 0.240656521918556 bayes_pls_golite062009
  • catalytic activity
  • 0.106988907594358 bayes_pls_golite062009
  • receptor binding
  • 0.0658139321670459 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
  • 0.0276971914937192 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
  • 2.7298921704023 bayes_pls_golite062009
  • protein binding
  • 2.6297172985864 bayes_pls_golite062009
  • protein disulfide isomerase activity
  • 2.4409950647303 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing S-S bonds
  • 2.4409950647303 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting keto- and enol-groups
  • 2.23398279564144 bayes_pls_golite062009
  • unfolded protein binding
  • 2.04158808514315 bayes_pls_golite062009
  • receptor binding
  • 1.01508461105961 bayes_pls_golite062009
  • catalytic activity
  • 0.276917867171685 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle