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Protein Overview: RSM25

General Information:
Name(s) found: RSM25 / YIL093C [SGD]
Description(s) found:
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  • gi|731844|sp|P40496.1|RT25_YEAST RecName: Full=37S ribosomal protein S25, mitochondrial [NCBI NR]
  • gi|6322098|ref|NP_012173.1| Mitochondrial ribosomal protein of the small subunit; Rsm25p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|577121|emb|CAA86701.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S49787 hypothetical protein YIL093c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Uncharacterized protein YIL093C - Saccharomyces cerevisiae (Baker's yeast) [Swiss-Prot]
  • 37S ribosomal protein S25, mitochondrial OS=Saccharomyces cerevisiae GN=RSM25 PE=1 SV=1 [Swiss-Prot]
  • RSM25 Mitochondrial ribosomal protein, small subunit [mips]
  • Mitochondrial ribosomal protein of the small subunit [SGD]
  • RSM25, Chr IX from 187987-188781, reverse complement [yeast_orfs2]
  • Chr IX from 187987-188781, reverse complement [yeastorf3.fasta]
  • Chr IX from 188781-187987, reverse complement [yeastorf5.fasta]
  • (P40496) Hypothetical 30.5 kDa protein in SGA1-KTR7 intergenic region [4932.FASTACCERV.txt]
  • RSM25 SGDID:S0001355, Chr IX from 188781-187987, reverse complement, Verified ORF [yeastflysequest.fasta]
  • Mitochondrial ribosomal protein of the small subunit [Saccharomyces cerevisiae]gi|577121|emb|CAA86701.1| unnamed protein product [Saccharomyces cerevisiae]gi|731844|sp|P40496|YIJ3_YEAST Hypothetical 30.5 kDa protein in SGA1-KTR7 intergenic regiongi|107 [nrdb_11152004_Chlamydomonas]
  • RSM25 SGDID:S000001355, Chr IX from 188781-187987, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • Uncharacterized protein YIL093C [nr-271106-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Mitochondrial ribosomal protein of the small subunit; Rsm25p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • 37S ribosomal protein S25, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM25 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • RSM25 SGDID:S000001355, Chr IX from 188784-187990, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [yeast-030211-contam.fasta]
  • RSM25 SGDID:S000001355, Chr IX from 188784-187990, Genome Release 64-2-1, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [20141208_orf_trans.fasta]
  • TR2479|c0_g1_i1|g.1736 ORF TR2479|c0_g1_i1|g.1736 TR2479|c0_g1_i1|m.1736 type:complete len:265 (+) TR2479|c0_g1_i1:254-1048(+) [DBVPG6044_S_cerevisiae-Sep2015-contam.fasta]
  • YIL093C SGDID:S000001355, Chr IX from 188784-187990, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
  • asmbl_8948|g.6583 ORF asmbl_8948|g.6583 asmbl_8948|m.6583 type:complete len:265 (+) asmbl_8948:96-890(+) [DBVPG6044_Trinity_v2_2_0_PASA_6May2016-contam.fasta]
  • ID=asmbl_8922|g.5442 ORF ID=asmbl_8922|g.5442 ID=asmbl_8922|m.5442 type:complete len:265 (+) ID=asmbl_8922:96-890(+) [DBVPG6044_quiverGenomes_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 264 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    mitochondrial small ribosomal subunit [IDALink to PubMed article]
    Biological Process: translation [IDALink to PubMed article]
    Molecular Function: structural constituent of ribosome [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIQTNAVNV LQRTSAYLKS GLLKETPAWY NVVASIPPST KFTREPRFKN PSNGHIIGKL  60
   61 VDVTEQPHAN NKGLYKTRPN SSDKRVGVKR LYRPPKLTYV EDRLRSLFYK QHPWELSRPK 120
  121 ILVENEIGDE NYDWSHMLQI GRPLDGESVI QRTMYLIKTK QYGDMVEAYD HARYEFYALR 180
  181 MQEETEQQVA LEEAEMFGSL FGVSAIEHGI QKEQEVLDVW EKKVVEETEL MAARTSNPAG 240
  241 SWKDDTTLNT AQEEESTTSE NLHF

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) EHD3 FYV4 MRP1 MRP10 MRP13 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 RSM10 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 SWS2
    View Details (MIPS) Mewes HW, et al. (2004) MRP1 MRP10 MRP13 MRP17 MRP2 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 PPE1 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 VAR1 YMR31
    View Details Krogan NJ, et al. (2006) CBF1 FYV4 MAM33 MRP1 MRP10 MRP17 MRP21 MRP4 MRP51 MRPL8 MRPS12 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS9 NAM9 NCL1 PET123 RIB4 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM28 RSM7 SVL3 SWS2 YDR124W YJR096W YKL151C YSP1
    View Details Gavin AC, et al. (2006) EHD3 MRP1 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS5 MRPS8 MRPS9 NAM9 PET123 RSM10 RSM19 RSM22 RSM23 RSM25 RSM27 RSM7
    View Details Gavin AC, et al. (2002) BEM2 CCM1 ECM16 EHD3 FYV4 GEP3 HSC82 MRP1 MRP10 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS5 MRPS8 MRPS9 NAM9 PAP2 PET123 PSD2 PUS7 RIX1 RSM10 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 TIF4631 UBP10 UTP20 UTP22
    View Details Ho Y, et al. (2002) AFG2 ALB1 ARX1 BUD20 EHD3 FYV4 HHF1, HHF2 HTA1 HTB1 HTB2 LHP1 MAM33 MNP1 MRPS16 NMD3 NOG1 NOP12 NOP13 NOP7 NSA2 NUG1 PRP43 PUF6 PWP1 RIX1 RSM24 RSM25 YBL044W
    View Details Qiu et al. (2008) EHD3 IMG1 IMG2 MAM33 MHR1 MNP1 MRP1 MRP10 MRP13 MRP17 MRP2 MRP20 MRP21 MRP4 MRP49 MRP51 MRP7 MRPL1 MRPL10 MRPL11 MRPL13 MRPL15 MRPL16 MRPL17 MRPL19 MRPL20 MRPL22 MRPL23 MRPL24 MRPL25 MRPL27 MRPL28 MRPL3 MRPL31 MRPL32 MRPL33 MRPL35 MRPL36 MRPL37 MRPL38 MRPL39 MRPL4 MRPL44 MRPL49 MRPL50 MRPL51 MRPL6 MRPL7 MRPL8 MRPL9 MRPS12 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 PPE1 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM28 RSM7 RTC6 SWS2 VAR1 YDR115W YML6 YMR31

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data RSM25 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..264] deduced N/A No confident structure predictions are available.
    2 View Details [132..264] MSA 2.021992 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle