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View Structure Prediction Details

Protein: RSM25
Organism: Saccharomyces cerevisiae
Length: 264 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM25.

Description E-value Query
Range
Subject
Range
RT25_YEAS7 - 37S ribosomal protein S25, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=RSM25 PE=3 S...
RT25_YEAST - 37S ribosomal protein S25, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
gi|190406304 - gi|190406304|gb|EDV09571.1| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae...
gi|207344364 - gi|207344364|gb|EDZ71533.1| YIL093Cp-like protein [Saccharomyces cerevisiae AWRI1631]
RSM25 - Mitochondrial ribosomal protein of the small subunit
0.0 [1..264] [1..264]
RT25_SCHPO - 37S ribosomal protein S25, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=r...
rsm25 - mitochondrial ribosomal protein subunit Rsm25
2.0E-89 [6..239] [5..212]

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Predicted Domain #1
Region A:
Residues: [1-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIQTNAVNV LQRTSAYLKS GLLKETPAWY NVVASIPPST KFTREPRFKN PSNGHIIGKL  60
   61 VDVTEQPHAN NKGLYKTRPN SSDKRVGVKR LYRPPKLTYV EDRLRSLFYK QHPWELSRPK 120
  121 ILVENEIGDE NYDWSHMLQI GRPLDGESVI QRTMYLIKTK QYGDMVEAYD HARYEFYALR 180
  181 MQEETEQQVA LEEAEMFGSL FGVSAIEHGI QKEQEVLDVW EKKVVEETEL MAARTSNPAG 240
  241 SWKDDTTLNT AQEEESTTSE NLHF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [132-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDWSHMLQIG RPLDGESVIQ RTMYLIKTKQ YGDMVEAYDH ARYEFYALRM QEETEQQVAL  60
   61 EEAEMFGSLF GVSAIEHGIQ KEQEVLDVWE KKVVEETELM AARTSNPAGS WKDDTTLNTA 120
  121 QEEESTTSEN LHF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle