| General Information: |
|
| Name(s) found: |
NOT3 /
YIL038C
[SGD]
|
| Description(s) found:
Found 22 descriptions. SHOW ALL |
|
| Organism: | Saccharomyces cerevisiae |
| Length: | 836 amino acids |
Gene Ontology: |
|
| Cellular Component: |
cytoplasm
[IDA ]
CCR4-NOT core complex [IPI ]
|
| Biological Process: |
nuclear-transcribed mRNA poly(A) tail shortening
[IDA]
regulation of transcription from RNA polymerase II promoter [IPI ]
protein ubiquitination [IMP ]
|
| Molecular Function: |
ubiquitin-protein ligase activity
[IMP]
3'-5'-exoribonuclease activity [IMP ]
|
| Sequence: |
|
| Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51
| | | | | |
1 MAHRKLQQEV DRVFKKINEG LEIFNSYYER HESCTNNPSQ KDKLESDLKR EVKKLQRLRE 60
61 QIKSWQSSPD IKDKDSLLDY RRSVEIAMEK YKAVEKASKE KAYSNISLKK SETLDPQERE 120
121 RRDISEYLSQ MIDELERQYD SLQVEIDKLL LLNKKKKTSS TTNDEKKEQY KRFQARYRWH 180
181 QQQMELALRL LANEELDPQD VKNVQDDINY FVESNQDPDF VEDETIYDGL NLQSNEAIAH 240
241 EVAQYFASQN AEDNNTSDAN ESLQDISKLS KKEQRKLERE AKKAAKLAAK NATGAAIPVA 300
301 GPSSTPSPVI PVADASKETE RSPSSSPIHN ATKPEEAVKT SIKSPRSSAD NLLPSLQKSP 360
361 SSATPETPTN VHTHIHQTPN GITGATTLKP ATLPAKPAGE LKWAVAASQA VEKDRKVTSA 420
421 SSTISNTSTK TPTTAAATTT SSNANSRIGS ALNTPKLSTS SLSLQPDNTG ASSSAATAAA 480
481 VLAAGAAAVH QNNQAFYRNM SSSHHPLVSL ATNPKSEHEV ATTVNQNGPE NTTKKVMEQK 540
541 EEESPEERNK LQVPTFGVFD DDFESDRDSE TEPEEEEQPS TPKYLSLEQR EAKTNEIKKE 600
601 FVSDFETLLL PSGVQEFIMS SELYNSQIES KITYKRSRDM CEISRLVEVP QGVNPPSPLD 660
661 AFRSTQQWDV MRCSLRDIII GSERLKEDSS SIYAKILENF RTLEMFSLFY NYYFAITPLE 720
721 REIAYKILNE RDWKVSKDGT MWFLRQGEVK FFNEICEVGD YKIFKLDDWT VIDKINFRLD 780
781 YSFLQPPVDT ASEVRDVSVD NNNVNDQSNV TLEQQKQEIS HGKQLLKQLK QGKISV |
| PUBLICATION | TOPOLOGY | COCOMPLEXED PROTEINS | |
| View Details | (MIPS) Mewes HW, et al. (2004) |
|
CAF16 CAF4 CCR4 CDC36 CDC39 DBF2 DHH1 IBA57 MOB1 MOT2 NOT3 NOT5 POP2 |
| View Details | Krogan NJ, et al. (2006) |
|
CYB5 ETR1 NOT3 RPL40B, RPL40A VMA5 VPS1 YPT1 |
| View Details | Gavin AC, et al. (2002) |
|
AHA1 ATP11 CAF130 CAF40 CCR4 CCT6 CDC36 CDC39 COP1 FAS2 GCN1 MOT2 NOT3 NOT5 PDC1 POL1 POL12 POP2 PRI1 PRI2 RVB2 SAM1 SEC27 TFC7 TFP1 YRA1 |
| View Details | Qiu et al. (2008) |
|
CAF16 CAF4 CAF40 CCR4 CDC36 CDC39 DBF2 MOB1 MOT2 NOT3 NOT5 POP2 |
The following runs contain data for this protein:
| BAIT | COMMENTS | PUBLICATION | |
| View Run | No Comments | Cheeseman IM, et al. (2002) | |
| View Run | No Comments | Toshima J, et al (2006) | |
| View Run | No Comments | Toshima J, et al (2006) | |
| View Run | No Comments | Schneider, DA, et al. (2006) | |
| View Run | #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment | Keck JM, et al. (2011) | |
| View Run | #29 Asynchronous Prep5-TiO2 Flowthrough | Keck JM, et al. (2011) |
NOT SHOWING SINGLE HITS. [ Show Single Hits ]
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| PROTEIN(S) | PUBLICATION | |
| View Data |
|
Huh WK, et al. (2003) |
Domains predicted:
| # | Region(s) | Method | Confidence | Match Description | |
| 1 | View Details | [1..107] |  |
8.39794 | Vimentin coil |
| 2 | View Details | [108..258] | |
N/A | Confident ab initio structure predictions are available. |
| 3 | View Details | [259..372] | |
11.01 | No description for 1deqA was found. |
| 4 | View Details | [373..687] | |
10.54 | No description for 1ei3A was found. |
| 5 | View Details | [688..836] | |
5.035994 | View MSA. No confident structure predictions are available. |
| Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
| Confidence of classification: | 0.95 |
Source: Reynolds et al. (2008)