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Protein Overview: SNU23

General Information:
Name(s) found: SNU23 / YDL098C [SGD]
Description(s) found:
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  • gi|74645048|sp|Q12368.1|SNU23_YEAST RecName: Full=23 kDa U4/U6.U5 small nuclear ribonucleoprotein component [NCBI NR]
  • gi|6320105|ref|NP_010185.1| Component of U4/U6.U5 snRNP involved in mRNA splicing via spliceosome; Snu23p [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S67640 hypothetical protein YDL098c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1431134|emb|CAA98665.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1199551|emb|CAA64915.1| ORF 2378 [Saccharomyces cerevisiae] [NCBI NR]
  • 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU23 PE=1 SV=1 [Swiss-Prot]
  • SNU23 Putative RNA binding zinc finger protein [mips]
  • Component of U4/U6.U5 snRNP involved in mRNA splicing via spliceosome [SGD]
  • SNU23, Chr IV from 284580-285164, reverse complement [yeast_orfs2]
  • Chr IV from 284580-285164, reverse complement [yeastorf3.fasta]
  • Chr IV from 285164-284580, reverse complement [yeastorf5.fasta]
  • >Q12368 (Q12368) ORF YDL098C from LEFT ARM of chromosome IV [4932.FASTACCERV.txt]
  • SNU23 SGDID:S0002256, Chr IV from 285165-284581, reverse complement, Verified ORF [yeastflysequest.fasta]
  • 23 kD U4/U6.U5 snRNP associated protein; Putative RNA binding zinc finger protein [Saccharomyces cerevisiae]gi|1199551|emb|CAA64915.1| ORF 2378 [Saccharomyces cerevisiae]gi|1431134|emb|CAA98665.1| unnamed protein product [Saccharomyces cerevisiae]gi|21 [nrdb_11152004_Chlamydomonas]
  • (Q12368) ORF 2378 protein (S.cerevisiae chromosome IV reading frame ORF YDL098c) [cerv4932.FASTAC]
  • SNU23 SGDID:S000002256, Chr IV from 285165-284581, reverse complement, Verified ORF, "Component of U4/U6.U5 snRNP involved in mRNA splicing via spliceosome" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • ORF 2378 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Component of U4/U6.U5 snRNP involved in mRNA splicing via spliceosome; Snu23p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNU23 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • SNU23 SGDID:S000002256, Chr IV from 285165-284581, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of U4/U6.U5 snRNP involved in mRNA splicing via spliceosome" [yeast-030211-contam.fasta]
  • SNU23 SGDID:S000002256, Chr IV from 285165-284581, Genome Release 64-2-1, reverse complement, Verified ORF, "Component of the U4/U6.U5 snRNP complex; involved in mRNA splicing via spliceosome" [20141208_orf_trans.fasta]
  • YDL098C SGDID:S000002256, Chr IV from 285165-284581, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of U4/U6.U5 snRNP involved in mRNA splicing via spliceosome" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 194 amino acids

    Gene Ontology:
    Cellular Component: U4/U6 x U5 tri-snRNP complex [IDALink to PubMed article][IPILink to PubMed article]
    Biological Process: nuclear mRNA splicing, via spliceosome [IMPLink to PubMed articleLink to PubMed article][IPILink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    metal ion binding [IEA]
    molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFGRRTWD REEYAEQARS GYDDRSLKAT LTPIELQALK SKYTNYDHLI KGSLKDLNKR  60
   61 KLTANTESLS SFKRGKKFGF YCDICNLTFK DTLQYIDHLN HKVHAIKFEN LFDEPLIIDI 120
  121 RDNDDVPQEE FELCYHNLIK DFVEVRSMET QSKRKRLLDT DVEKAKKVAT KPSIESESKV 180
  181 SQMMGFSNFA TSKK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) BRR2 CUS1 DIB1 HSH155 LEA1 LSM2 LSM6 PRP11 PRP21 PRP24 PRP3 PRP31 PRP38 PRP4 PRP6 PRP8 PRP9 RSE1 SMB1 SMD1 SMD2 SMD3 SNU114 SNU23 SNU66 SPP381
    View Details Krogan NJ, et al. (2006) PRP38 SNU23 SPP381
    View Details Gavin AC, et al. (2006) BRR2 CUS1 LEA1 PRP21 PRP3 PRP31 PRP4 PRP6 PRP8 PRP9 SMB1 SNU114 SNU23 SNU66 SPP381
    View Details Gavin AC, et al. (2002) AAR2 ASC1 BRR1 BUD31 CDC33 CEF1 CLF1 CSN12 CUS1 CWC2 CWC22 CWC23 DCP2 DHH1 DIB1 ECM2 ERB1 GCN2 HSH155 HTA1 IMG1 KRS1 LEA1 LIN1 LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 LUC7 MRP7 MRPL28 MRPL3 MRPL35 MRPL38 MRPL4 MRPL8 MRPS5 MSL1 MUD1 NAM7 NOG2 NOP1 NUG1 PAT1 PRP11 PRP18 PRP19 PRP21 PRP24 PRP28 PRP3 PRP31 PRP38 PRP39 PRP4 PRP40 PRP42 PRP43 PRP46 PRP6 PRP8 PRP9 RSE1 RVB2 SLU7 SMB1 SMD1 SMD2 SMD3 SME1 SMX2 SMX3 SNP1 SNT309 SNU114 SNU23 SNU56 SNU66 SNU71 SPP381 SPP382 SQS1 SRB2 SRO9 STO1 SYF1 TOS4 UTP21 YML6
    View Details Qiu et al. (2008) AAR2 BRR1 BRR2 CBC2 CDC40 CEF1 CLF1 CUS1 CUS2 CWC15 CWC2 CWC22 CWC23 DHR2 DIB1 ECM2 HSH155 HSH49 IST3 ISY1 LEA1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 LSM8 LUC7 MAK5 MSL1 MUD1 MUD2 NAM8 PRP11 PRP16 PRP18 PRP2 PRP21 PRP22 PRP24 PRP28 PRP3 PRP31 PRP38 PRP39 PRP4 PRP40 PRP42 PRP43 PRP5 PRP6 PRP8 PRP9 RSE1 SLU7 SMB1 SMD1 SMD2 SMD3 SME1 SMX2 SMX3 SNP1 SNU114 SNU13 SNU23 SNU56 SNU66 SNU71 SPP2 SPP381 SPP382 STO1 SUB2 SYF2 YHC1

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen APC5 SNU23 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data SNU23 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle