| General Information: |
|
| Name(s) found: |
NIC96 /
YFR002W
[SGD]
|
| Description(s) found:
Found 23 descriptions. SHOW ALL |
|
| Organism: | Saccharomyces cerevisiae |
| Length: | 839 amino acids |
Gene Ontology: |
|
| Cellular Component: |
nuclear pore
[IDA ]
|
| Biological Process: |
mRNA export from nucleus
[TAS]
rRNA export from nucleus [TAS ]
nuclear pore organization [IMP ]
snRNP protein import into nucleus [TAS ]
mRNA-binding (hnRNP) protein import into nucleus [TAS ]
snRNA export from nucleus [TAS ]
protein import into nucleus [IMP ]
tRNA export from nucleus [TAS ]
NLS-bearing substrate import into nucleus [TAS ]
protein export from nucleus [TAS ]
ribosomal protein import into nucleus [TAS ]
|
| Molecular Function: |
structural molecule activity
[TAS]
|
| Sequence: |
|
| Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51
| | | | | |
1 MLETLRGNKL HSGTSKGANK KLNELLESSD NLPSASSELG SIQVSINELR RRVFQLRSKN 60
61 KASKDYTKAH YLLANSGLSF EDVDAFIKDL QTNQFLEPNP PKIIESEELE FYIRTKKEEN 120
121 ILMSIEQLLN GATKDFDNFI NHNLNLDWAQ HKNEVMKNFG ILIQDKKTVD HKKSISSLDP 180
181 KLPSWGNKGN NILNSNESRL NVNENNILRE KFENYARIVF QFNNSRQANG NFDIANEFIS 240
241 ILSSANGTRN AQLLESWKIL ESMKSKDINI VEVGKQYLEQ QFLQYTDNLY KKNMNEGLAT 300
301 NVNKIKSFID TKLKKADKSW KISNLTVING VPIWALIFYL LRAGLIKEAL QVLVENKANI 360
361 KKVEQSFLTY FKAYASSKDH GLPVEYSTKL HTEYNQHIKS SLDGDPYRLA VYKLIGRCDL 420
421 SRKNIPAVTL SIEDWLWMHL MLIKEKDAEN DPVYERYSLE DFQNIIISYG PSRFSNYYLQ 480
481 TLLLSGLYGL AIDYTYTFSE MDAVHLAIGL ASLKLFKIDS STRLTKKPKR DIRFANILAN 540
541 YTKSFRYSDP RVAVEYLVLI TLNEGPTDVE LCHEALRELV LETKEFTVLL GKIGRDGARI 600
601 PGVIEERQPL LHVRDEKEFL HTITEQAARR ADEDGRIYDS ILLYQLAEEY DIVITLVNSL 660
661 LSDTLSASDL DQPLVGPDDN SETNPVLLAR RMASIYFDNA GISRQIHVKN KEICMLLLNI 720
721 SSIRELYFNK QWQETLSQME LLDLLPFSDE LSARKKAQDF SNLDDNIVKN IPNLLIITLS 780
781 CISNMIHILN ESKYQSSTKG QQIDSLKNVA RQCMIYAGMI QYRMPRETYS TLINIDVSL |
| PUBLICATION | TOPOLOGY | COCOMPLEXED PROTEINS | |
| View Details | Riffle et al. (2010) (Unpublished Data) |
|
NIC96 NSP1 NUP57 |
| View Details | (MIPS) Mewes HW, et al. (2004) |
|
NIC96 NSP1 NUP49 NUP57 |
| View Details | Krogan NJ, et al. (2006) |
|
NIC96 NUP49 NUP57 |
| View Details | Gavin AC, et al. (2002) |
|
MRPL1 MRPL15 MRPL24 MRPL3 MRPL35 MRPL8 NIC96 NSP1 NUP116 NUP159 NUP82 YML6 |
| View Details | Qiu et al. (2008) |
|
GLE2 MEX67 NDC1 NIC96 NSP1 NUP1 NUP100 NUP116 NUP120 NUP133 NUP145 NUP157 NUP159 NUP170 NUP188 NUP2 NUP42 NUP49 NUP57 NUP82 NUP84 SEC13 SUS1 |
The following runs contain data for this protein:
| BAIT | COMMENTS | PUBLICATION | |
| View Run | Sample 2- cpn2 from june 2005 | McCusker D, et al (2007) | |
| View Run | #12 Mitotic Prep1-TiO2 Flowthrough | Keck JM, et al. (2011) |
SHOWING SINGLE HITS. [ Hide Single Hits ]
| BAIT | PREY | HITS | PUBLICATION | |
| View Screen | 1 | Hazbun TR, et al. (2003) |
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Domains predicted:
| # | Region(s) | Method | Confidence | Match Description | |
| 1 | View Details | [1..154] [677..696] |
 |
7.17 | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| 2 | View Details | [155..362] [482..676] [697..729] |
|
7.17 | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| 3 | View Details | [363..481] | |
7.17 | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| 4 | View Details | [730..839] | |
9.46 | Histidine ammonia-lyase (HAL) |
| Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
| Confidence of classification: | 0.77 |
Source: Reynolds et al. (2008)