| Protein: | NIC96 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 839 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIC96.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..839] | [1..838] |
|
|
0.0 | [24..839] | [8..818] |
|
|
0.0 | [25..838] | [226..1103] |
|
|
0.0 | [24..839] | [8..819] |
|
|
0.0 | [16..839] | [8..822] |
|
|
0.0 | [18..839] | [22..850] |
|
|
0.0 | [24..785] | [12..823] |
|
Region A: Residues: [1-154] |
1 11 21 31 41 51
| | | | | |
1 MLETLRGNKL HSGTSKGANK KLNELLESSD NLPSASSELG SIQVSINELR RRVFQLRSKN 60
61 KASKDYTKAH YLLANSGLSF EDVDAFIKDL QTNQFLEPNP PKIIESEELE FYIRTKKEEN 120
121 ILMSIEQLLN GATKDFDNFI NHNLNLDWAQ HKNE
|
|
Region B: Residues: [677-696] |
1 11 21 31 41 51
| | | | | |
1 PDDNSETNPV LLARRMASIY
|
| Detection Method: |  |
| Confidence: | 7.17 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [155-362] |
1 11 21 31 41 51
| | | | | |
1 VMKNFGILIQ DKKTVDHKKS ISSLDPKLPS WGNKGNNILN SNESRLNVNE NNILREKFEN 60
61 YARIVFQFNN SRQANGNFDI ANEFISILSS ANGTRNAQLL ESWKILESMK SKDINIVEVG 120
121 KQYLEQQFLQ YTDNLYKKNM NEGLATNVNK IKSFIDTKLK KADKSWKISN LTVINGVPIW 180
181 ALIFYLLRAG LIKEALQVLV ENKANIKK
|
|
Region B: Residues: [482-676] |
1 11 21 31 41 51
| | | | | |
1 LLLSGLYGLA IDYTYTFSEM DAVHLAIGLA SLKLFKIDSS TRLTKKPKRD IRFANILANY 60
61 TKSFRYSDPR VAVEYLVLIT LNEGPTDVEL CHEALRELVL ETKEFTVLLG KIGRDGARIP 120
121 GVIEERQPLL HVRDEKEFLH TITEQAARRA DEDGRIYDSI LLYQLAEEYD IVITLVNSLL 180
181 SDTLSASDLD QPLVG
|
|
Region C: Residues: [697-729] |
1 11 21 31 41 51
| | | | | |
1 FDNAGISRQI HVKNKEICML LLNISSIREL YFN
|
| Detection Method: | |
| Confidence: | 7.17 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [363-481] |
1 11 21 31 41 51
| | | | | |
1 VEQSFLTYFK AYASSKDHGL PVEYSTKLHT EYNQHIKSSL DGDPYRLAVY KLIGRCDLSR 60
61 KNIPAVTLSI EDWLWMHLML IKEKDAENDP VYERYSLEDF QNIIISYGPS RFSNYYLQT
|
| Detection Method: | |
| Confidence: | 7.17 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [730-839] |
1 11 21 31 41 51
| | | | | |
1 KQWQETLSQM ELLDLLPFSD ELSARKKAQD FSNLDDNIVK NIPNLLIITL SCISNMIHIL 60
61 NESKYQSSTK GQQIDSLKNV ARQCMIYAGM IQYRMPRETY STLINIDVSL
|
| Detection Method: | |
| Confidence: | 9.46 |
| Match: | 1b8fA |
| Description: | Histidine ammonia-lyase (HAL) |
Matching Structure (courtesy of the PDB): |
|
