Protein: | NIC96 |
Organism: | Saccharomyces cerevisiae |
Length: | 839 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIC96.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..839] | [1..838] |
|
0.0 | [24..839] | [8..818] |
|
0.0 | [25..838] | [226..1103] |
|
0.0 | [24..839] | [8..819] |
|
0.0 | [16..839] | [8..822] |
|
0.0 | [18..839] | [22..850] |
|
0.0 | [24..785] | [12..823] |
Region A: Residues: [1-154] |
1 11 21 31 41 51 | | | | | | 1 MLETLRGNKL HSGTSKGANK KLNELLESSD NLPSASSELG SIQVSINELR RRVFQLRSKN 60 61 KASKDYTKAH YLLANSGLSF EDVDAFIKDL QTNQFLEPNP PKIIESEELE FYIRTKKEEN 120 121 ILMSIEQLLN GATKDFDNFI NHNLNLDWAQ HKNE |
Region B: Residues: [677-696] |
1 11 21 31 41 51 | | | | | | 1 PDDNSETNPV LLARRMASIY |
Detection Method: | ![]() |
Confidence: | 7.17 |
Match: | 1bgxT |
Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [155-362] |
1 11 21 31 41 51 | | | | | | 1 VMKNFGILIQ DKKTVDHKKS ISSLDPKLPS WGNKGNNILN SNESRLNVNE NNILREKFEN 60 61 YARIVFQFNN SRQANGNFDI ANEFISILSS ANGTRNAQLL ESWKILESMK SKDINIVEVG 120 121 KQYLEQQFLQ YTDNLYKKNM NEGLATNVNK IKSFIDTKLK KADKSWKISN LTVINGVPIW 180 181 ALIFYLLRAG LIKEALQVLV ENKANIKK |
Region B: Residues: [482-676] |
1 11 21 31 41 51 | | | | | | 1 LLLSGLYGLA IDYTYTFSEM DAVHLAIGLA SLKLFKIDSS TRLTKKPKRD IRFANILANY 60 61 TKSFRYSDPR VAVEYLVLIT LNEGPTDVEL CHEALRELVL ETKEFTVLLG KIGRDGARIP 120 121 GVIEERQPLL HVRDEKEFLH TITEQAARRA DEDGRIYDSI LLYQLAEEYD IVITLVNSLL 180 181 SDTLSASDLD QPLVG |
Region C: Residues: [697-729] |
1 11 21 31 41 51 | | | | | | 1 FDNAGISRQI HVKNKEICML LLNISSIREL YFN |
Detection Method: | ![]() |
Confidence: | 7.17 |
Match: | 1bgxT |
Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [363-481] |
1 11 21 31 41 51 | | | | | | 1 VEQSFLTYFK AYASSKDHGL PVEYSTKLHT EYNQHIKSSL DGDPYRLAVY KLIGRCDLSR 60 61 KNIPAVTLSI EDWLWMHLML IKEKDAENDP VYERYSLEDF QNIIISYGPS RFSNYYLQT |
Detection Method: | ![]() |
Confidence: | 7.17 |
Match: | 1bgxT |
Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [730-839] |
1 11 21 31 41 51 | | | | | | 1 KQWQETLSQM ELLDLLPFSD ELSARKKAQD FSNLDDNIVK NIPNLLIITL SCISNMIHIL 60 61 NESKYQSSTK GQQIDSLKNV ARQCMIYAGM IQYRMPRETY STLINIDVSL |
Detection Method: | ![]() |
Confidence: | 9.46 |
Match: | 1b8fA |
Description: | Histidine ammonia-lyase (HAL) |
Matching Structure (courtesy of the PDB):![]() |