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Protein Overview: RPS10B

General Information:
Name(s) found: RPS10B / YMR230W [SGD]
Description(s) found:
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  • gi|887611|emb|CAA90201.1| unknown [Saccharomyces cerevisiae] [NCBI NR]
  • gi|6323886|ref|NP_013957.1| Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10; Rps10bp [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S57597 ribosomal protein S10.e.B, cytosolic - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1176558|sp|P46784.1|RS10B_YEAST RecName: Full=40S ribosomal protein S10-B [NCBI NR]
  • (P46784) 40S ribosomal protein S10-B [Swiss-Prot]
  • 40S ribosomal protein S10-B OS=Saccharomyces cerevisiae GN=RPS10B PE=1 SV=1 [Swiss-Prot]
  • RPS10B Ribosomal protein [mips]
  • Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 [SGD]
  • RPS10B, Chr XIII from 732413-732464,732875-733140 [yeast_orfs2]
  • Chr XIII from 732413-732464,732875-733140 [yeastorf3.fasta]
  • RPS10B SGDID:S0004843, Chr XIII from 732413-732464,732875-733140, Verified ORF [yeastflysequest.fasta]
  • Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 [Saccharomyces cerevisiae]gi|887611|emb|CAA90201.1| unknown [Saccharomyces cerevisiae]gi|1362397|pir||S57597 ribosomal pr [nrdb_11152004_Chlamydomonas]
  • RPS10B SGDID:S000004843, Chr XIII from 732413-732464,732875-733140, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • unknown [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • 40S ribosomal protein S10-B [nr-271106-contam.fasta]
  • Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10; Rps10bp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • 40S ribosomal protein S10-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS10B PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • RPS10B SGDID:S000004843, Chr XIII from 732414-732465,732876-733141, Genome Release 64-1-1, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10" [yeast-030211-contam.fasta]
  • RPS10B SGDID:S000004843, Chr XIII from 732414-732465,732876-733141, Genome Release 64-2-1, Verified ORF, "Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S10, no bacterial homolog; RPS10B has a paralog, RPS10A, that arose from the whole genome duplication" [20141208_orf_trans.fasta]
  • TR7307|c0_g1_i1|g.5334 ORF TR7307|c0_g1_i1|g.5334 TR7307|c0_g1_i1|m.5334 type:complete len:106 (+) TR7307|c0_g1_i1:60-377(+) [DBVPG6044_S_cerevisiae-Sep2015-contam.fasta]
  • TR7307|c0_g2_i1|g.5335 ORF TR7307|c0_g2_i1|g.5335 TR7307|c0_g2_i1|m.5335 type:complete len:106 (+) TR7307|c0_g2_i1:60-377(+) [DBVPG6044_S_cerevisiae-Sep2015-contam.fasta]
  • YMR230W SGDID:S000004843, Chr XIII from 732414-732465,732876-733141, Genome Release 64-1-1, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
  • asmbl_4248|g.2992 ORF asmbl_4248|g.2992 asmbl_4248|m.2992 type:complete len:106 (+) asmbl_4248:45-362(+) [DBVPG6044_Trinity_v2_2_0_PASA_6May2016-contam.fasta]
  • asmbl_4240|g.2906 ORF asmbl_4240|g.2906 asmbl_4240|m.2906 type:complete len:106 (+) asmbl_4240:45-362(+) [Y12_Trinity_v2_2_0_PASA_6May2016-contam.fasta]
  • ID=asmbl_4249|g.2445 ORF ID=asmbl_4249|g.2445 ID=asmbl_4249|m.2445 type:complete len:106 (+) ID=asmbl_4249:45-362(+) [DBVPG6044_quiverGenomes_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
  • ID=asmbl_4245|g.2383 ORF ID=asmbl_4245|g.2383 ID=asmbl_4245|m.2383 type:complete len:106 (+) ID=asmbl_4245:45-362(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 105 amino acids

    Gene Ontology:
    Cellular Component: ribonucleoprotein complex [IEA]
    cytoplasm [IEA]
    cytosolic small ribosomal subunit [NAS]
    ribosome [IEA]
    Biological Process: translation [TASLink to PubMed article]
    Molecular Function: structural constituent of ribosome [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPKQERNK IHQYLFQEGV VVAKKDFNQA KHEEIDTKNL YVIKALQSLT SKGYVKTQFS  60
   61 WQYYYYTLTE EGVEYLREYL NLPEHIVPGT YIQERNPSQR PQRRY

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) RPS10B RPS16B, RPS16A RPS22A
    View Details (MIPS) Mewes HW, et al. (2004) ASC1 RPS0A RPS0B RPS10A RPS10B RPS11A, RPS11B RPS12 RPS13 RPS14A RPS14B RPS15 RPS16B, RPS16A RPS17A RPS17B RPS18B, RPS18A RPS19A RPS19B RPS1A RPS1B RPS2 RPS20 RPS21A RPS21B RPS22A RPS22B RPS23B, RPS23A RPS24A, RPS24B RPS25A RPS25B RPS26A RPS26B RPS27A RPS27B RPS28A RPS28B RPS29A RPS29B RPS3 RPS30B, RPS30A RPS31 RPS4B, RPS4A RPS5 RPS6A, RPS6B RPS7A RPS7B RPS8B, RPS8A RPS9A RPS9B
    View Details Krogan NJ, et al. (2006) PLB3 RPS10B SCM3 SUP35 SUP45 TRM12 VPS3
    View Details Gavin AC, et al. (2006) CDC36 MRD1 RPS10B
    View Details Qiu et al. (2008) ASC1 ATG27 BUD20 FYV12 NAT3 RKI1 RPL10 RPL11A RPL11B RPL12B, RPL12A RPL13A RPL13B RPL14A RPL14B RPL15A RPL16A RPL16B RPL17A RPL17B RPL18A, RPL18B RPL19B, RPL19A RPL1A, RPL1B RPL20A RPL20B RPL21A RPL21B RPL22A RPL22B RPL23B, RPL23A RPL24A RPL24B RPL25 RPL26A RPL26B RPL27A RPL27B RPL28 RPL29 RPL2A, RPL2B RPL3 RPL30 RPL31A RPL31B RPL32 RPL33A RPL33B RPL34A RPL34B RPL35A, RPL35B RPL36A RPL36B RPL37A RPL37B RPL38 RPL39 RPL40B, RPL40A RPL41A, RPL41B RPL42B, RPL42A RPL43B, RPL43A RPL4A RPL5 RPL6A RPL6B RPL7A RPL7B RPL8A RPL8B RPL9A RPL9B RPP0 RPP1A RPP1B RPP2A RPP2B RPS0A RPS0B RPS10A RPS10B RPS11A, RPS11B RPS12 RPS13 RPS14A RPS14B RPS15 RPS16B, RPS16A RPS17A RPS17B RPS18B, RPS18A RPS19A RPS19B RPS1A RPS1B RPS2 RPS20 RPS21A RPS21B RPS22A RPS22B RPS23B, RPS23A RPS24A, RPS24B RPS25A RPS25B RPS26A RPS26B RPS27A RPS27B RPS28A RPS28B RPS29A RPS29B RPS3 RPS30B, RPS30A RPS31 RPS4B, RPS4A RPS5 RPS6A, RPS6B RPS7A RPS7B RPS8B, RPS8A RPS9A RPS9B TOS4 TSR1 VAR1 YPL199C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MIF2 No Comments Cheeseman IM, et al. (2002)
    View Run TOR1 No Comments Reinke A, et al. (2004)
    View Run TOR2 No Comments Reinke A, et al. (2004)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run DAD1 Dam1-765 complex purified from yeast with Dad1-TAP Shimogawa MM, et al. (2006)
    View Run DAD1 Dam1-765 complex purified from yeast with Dad1-TAP Shimogawa MM, et al. (2006)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
    View Run BOI2 Boi 2 gst control McCusker D, et al (2007)
    View Run MLP2 #19 Asynchronous Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #20 Asynchronous Prep1-TiO2 Phosphopeptide enrichment, PartB Keck JM, et al. (2011)
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #08 Alpha Factor Prep4-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #19b Asynchronous Prep1-new search criteria Keck JM, et al. (2011)
    View Run None Entered #17 Mitotic Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #19a Asynchronous Prep1-new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data RPS10B Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] FFAS03 1.1 Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle