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View Structure Prediction Details

Protein: RPS10B
Organism: Saccharomyces cerevisiae
Length: 105 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS10B.

Description E-value Query
Range
Subject
Range
gi|114606978 - gi|114606978|ref|XP_001171658.1| PREDICTED: similar to ribosomal protein S10 isoform 3 [Pan troglody...
tr|A0A1W2PQS6|A0... - IPI:IPI00978180.1|REFSEQ:NP_001189399 Tax_Id=9606 Gene_Symbol=RPS10-NUDT3 RPS10-NUDT3 protein, Tax_I...
224.0 [0..1] [104..1]
gi|73972594 - gi|73972594|ref|XP_532112.2| PREDICTED: similar to 40S ribosomal protein S10 [Canis familiaris]
221.0 [0..1] [104..150]
gi|55665989 - gi|55665989|emb|CAH73101.1| ribosomal protein S10 [Homo sapiens]
215.0 [0..1] [104..1]
gi|28189302 - gi|28189302|dbj|BAC56342.1| similar to ribosomal protein S10 [Bos taurus]
ENSOCUP000000230... - pep:novel scaffold:oryCun2:GL018718:1306249:1306695:-1 gene:ENSOCUG00000025431 transcript:ENSOCUT000...
212.0 [0..1] [104..1]
gi|62652203, gi|... - gi|62652203|ref|XP_235190.2| PREDICTED: similar to ribosomal protein S10 [Rattus norvegicus], gi|109...
211.0 [0..1] [104..1]
gi|94401105, gi|... - gi|94401105|ref|XP_992604.1| PREDICTED: similar to ribosomal protein S10 [Mus musculus], gi|94400441...
211.0 [0..1] [104..1]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPKQERNK IHQYLFQEGV VVAKKDFNQA KHEEIDTKNL YVIKALQSLT SKGYVKTQFS  60
   61 WQYYYYTLTE EGVEYLREYL NLPEHIVPGT YIQERNPSQR PQRRY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 1ub9A
Description: Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle