YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS10B
Organism:	Saccharomyces cerevisiae
Length:	105 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS10B.

Description	E-value	Query Range	Subject Range
gi\|114606978 - gi\|114606978\|ref\|XP_001171658.1\| PREDICTED: similar to ribosomal protein S10 isoform 3 [Pan troglody... tr\|A0A1W2PQS6\|A0... - IPI:IPI00978180.1\|REFSEQ:NP_001189399 Tax_Id=9606 Gene_Symbol=RPS10-NUDT3 RPS10-NUDT3 protein, Tax_I...	224.0	[0..1]	[104..1]
gi\|73972594 - gi\|73972594\|ref\|XP_532112.2\| PREDICTED: similar to 40S ribosomal protein S10 [Canis familiaris]	221.0	[0..1]	[104..150]
gi\|55665989 - gi\|55665989\|emb\|CAH73101.1\| ribosomal protein S10 [Homo sapiens]	215.0	[0..1]	[104..1]
gi\|28189302 - gi\|28189302\|dbj\|BAC56342.1\| similar to ribosomal protein S10 [Bos taurus] ENSOCUP000000230... - pep:novel scaffold:oryCun2:GL018718:1306249:1306695:-1 gene:ENSOCUG00000025431 transcript:ENSOCUT000...	212.0	[0..1]	[104..1]
gi\|62652203, gi\|... - gi\|62652203\|ref\|XP_235190.2\| PREDICTED: similar to ribosomal protein S10 [Rattus norvegicus], gi\|109...	211.0	[0..1]	[104..1]
gi\|94401105, gi\|... - gi\|94401105\|ref\|XP_992604.1\| PREDICTED: similar to ribosomal protein S10 [Mus musculus], gi\|94400441...	211.0	[0..1]	[104..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPKQERNK IHQYLFQEGV VVAKKDFNQA KHEEIDTKNL YVIKALQSLT SKGYVKTQFS  60
   61 WQYYYYTLTE EGVEYLREYL NLPEHIVPGT YIQERNPSQR PQRRY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	1ub9A
Description:	Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits