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Protein Overview: SCP160

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
View Run MLP2 #19 Asynchronous Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #14 Mitotic Prep2-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #19b Asynchronous Prep1-new search criteria Keck JM, et al. (2011)
View Run MLP2 #19a Asynchronous Prep1-new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SCP160 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..171] MSA 1.045986 View MSA. No confident structure predictions are available.
2 View Details [172..266] PSI-BLAST 7.522879 RNA splicing factor 1
3 View Details [267..339] deduced N/A Confident ab initio structure predictions are available.
4 View Details [340..417] PSI-BLAST 3.221849 S1 domain of NusA; Transcription factor NusA, C-terminal domains; Transcription factor NusA, N-terminal domain
5 View Details [418..483] PSI-BLAST 44.39794 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
6 View Details [484..508]
[643..701]
PSI-BLAST 44.39794 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
7 View Details [509..642]
[702..849]
PSI-BLAST 44.39794 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
8 View Details [850..941] ORFEUS 11.56 HnRNP K, KH3
9 View Details [942..1010] PSI-BLAST 32.383689 Vigilin, KH6
10 View Details [1011..1082] PSI-BLAST 3.39794 S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase
11 View Details [1083..1148] PSI-BLAST 18.045757 Far upstream binding element, FBP, KH3 and KH4 domains
12 View Details [1149..1222] PSI-BLAST 18.045757 Far upstream binding element, FBP, KH3 and KH4 domains

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • RNA binding
  • 4.12546383654586 bayes_pls_golite062009
  • nucleic acid binding
  • 3.94829960615623 bayes_pls_golite062009
  • binding
  • 2.88506305420422 bayes_pls_golite062009
  • mRNA binding
  • 2.56780637687327 bayes_pls_golite062009
  • transcription regulator activity
  • 1.92947291634926 bayes_pls_golite062009
  • DNA binding
  • 1.60641898958006 bayes_pls_golite062009
  • transcription repressor activity
  • 1.48649836219447 bayes_pls_golite062009
  • protein binding
  • 1.09698608157472 bayes_pls_golite062009
  • signal transducer activity
  • 1.00592302262807 bayes_pls_golite062009
  • molecular transducer activity
  • 1.00592302262807 bayes_pls_golite062009
  • transcription factor activity
  • 0.693474044974507 bayes_pls_golite062009
  • catalytic activity
  • 0.1435046019283 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
  • 4.53756130039297 bayes_pls_golite062009
  • nucleic acid binding
  • 4.20349765519502 bayes_pls_golite062009
  • binding
  • 3.03029468866374 bayes_pls_golite062009
  • mRNA binding
  • 2.96669269799942 bayes_pls_golite062009
  • transcription regulator activity
  • 1.94297875367222 bayes_pls_golite062009
  • DNA binding
  • 1.62328996594128 bayes_pls_golite062009
  • transcription repressor activity
  • 1.56066397370123 bayes_pls_golite062009
  • protein binding
  • 1.16541072642796 bayes_pls_golite062009
  • signal transducer activity
  • 1.00684766673868 bayes_pls_golite062009
  • molecular transducer activity
  • 1.00684766673868 bayes_pls_golite062009
  • transcription factor activity
  • 0.687475481524107 bayes_pls_golite062009
  • catalytic activity
  • 0.113112541746059 bayes_pls_golite062009
  • 0.0350881281129536 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6
    Term Confidence Notes
  • structural constituent of ribosome
  • 3.83603737358696 bayes_pls_golite062009
  • transcription regulator activity
  • 3.74935939787001 bayes_pls_golite062009
  • structural molecule activity
  • 3.27216171079692 bayes_pls_golite062009
  • nucleic acid binding
  • 1.97035850468348 bayes_pls_golite062009
  • RNA binding
  • 1.82714562401326 bayes_pls_golite062009
  • binding
  • 1.5466198129438 bayes_pls_golite062009
  • transcription termination factor activity
  • 1.53584399356788 bayes_pls_golite062009
  • DNA binding
  • 1.42930679560452 bayes_pls_golite062009
  • transcription repressor activity
  • 0.805620048597073 bayes_pls_golite062009
  • ribonuclease activity
  • 0.621577761289592 bayes_pls_golite062009
  • transcription factor activity
  • 0.599956044396141 bayes_pls_golite062009
  • telomeric DNA binding
  • 0.55247451742813 bayes_pls_golite062009
  • protein binding
  • 0.523813050066193 bayes_pls_golite062009
  • deacetylase activity
  • 0.446316761887039 bayes_pls_golite062009
  • ATPase activity
  • 0.368110506118156 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.31569932728929 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 0.2703049141847 bayes_pls_golite062009
  • pyrophosphatase activity
  • 0.256048137250105 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
  • 0.237784820115582 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
  • 0.235837031080758 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 0.20814642097724 bayes_pls_golite062009
  • translation initiation factor activity
  • 0.2080607201312 bayes_pls_golite062009
  • exoribonuclease activity
  • 0.19299160134668 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.158428921465478 bayes_pls_golite062009
  • catalytic activity
  • 0.10089766806364 bayes_pls_golite062009
  • ATPase activity, coupled
  • 0.0992081031610161 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
  • 0.0481402103729352 bayes_pls_golite062009
    7
    Term Confidence Notes
  • RNA binding
  • 4.12546383654586 bayes_pls_golite062009
  • nucleic acid binding
  • 3.94829960615623 bayes_pls_golite062009
  • binding
  • 2.88506305420422 bayes_pls_golite062009
  • mRNA binding
  • 2.56780637687327 bayes_pls_golite062009
  • transcription regulator activity
  • 1.92947291634926 bayes_pls_golite062009
  • DNA binding
  • 1.60641898958006 bayes_pls_golite062009
  • transcription repressor activity
  • 1.48649836219447 bayes_pls_golite062009
  • protein binding
  • 1.09698608157472 bayes_pls_golite062009
  • signal transducer activity
  • 1.00592302262807 bayes_pls_golite062009
  • molecular transducer activity
  • 1.00592302262807 bayes_pls_golite062009
  • transcription factor activity
  • 0.693474044974507 bayes_pls_golite062009
  • catalytic activity
  • 0.1435046019283 bayes_pls_golite062009
    8
    Term Confidence Notes
  • RNA binding
  • 4.53756130039297 bayes_pls_golite062009
  • nucleic acid binding
  • 4.20349765519502 bayes_pls_golite062009
  • binding
  • 3.03029468866374 bayes_pls_golite062009
  • mRNA binding
  • 2.96669269799942 bayes_pls_golite062009
  • transcription regulator activity
  • 1.94297875367222 bayes_pls_golite062009
  • DNA binding
  • 1.62328996594128 bayes_pls_golite062009
  • transcription repressor activity
  • 1.56066397370123 bayes_pls_golite062009
  • protein binding
  • 1.16541072642796 bayes_pls_golite062009
  • signal transducer activity
  • 1.00684766673868 bayes_pls_golite062009
  • molecular transducer activity
  • 1.00684766673868 bayes_pls_golite062009
  • transcription factor activity
  • 0.687475481524107 bayes_pls_golite062009
  • catalytic activity
  • 0.113112541746059 bayes_pls_golite062009
  • 0.0350881281129536 bayes_pls_golite062009
    9
    Term Confidence Notes
  • structural constituent of ribosome
  • 3.72252697400364 bayes_pls_golite062009
  • nucleic acid binding
  • 3.7132569326175 bayes_pls_golite062009
  • structural molecule activity
  • 3.13468682204566 bayes_pls_golite062009
  • DNA binding
  • 3.12689559879854 bayes_pls_golite062009
  • binding
  • 2.40532042551671 bayes_pls_golite062009
  • RNA binding
  • 1.76502371106766 bayes_pls_golite062009
  • transcription regulator activity
  • 1.50283169429524 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.10289736160471 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.96886436248958 bayes_pls_golite062009
  • transcription repressor activity
  • 0.805620048597073 bayes_pls_golite062009
  • transcription factor activity
  • 0.599956044396141 bayes_pls_golite062009
  • telomeric DNA binding
  • 0.55247451742813 bayes_pls_golite062009
  • ribonuclease activity
  • 0.498439111185072 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.3506031439435 bayes_pls_golite062009
  • translation regulator activity
  • 0.31332179848255 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.263197317040851 bayes_pls_golite062009
  • translation initiation factor activity
  • 0.2080607201312 bayes_pls_golite062009
  • nuclease activity
  • 0.17660139576327 bayes_pls_golite062009
  • protein binding
  • 0.152645195799531 bayes_pls_golite062009
    10
    Term Confidence Notes
  • RNA binding
  • 4.53756130039297 bayes_pls_golite062009
  • nucleic acid binding
  • 4.20349765519502 bayes_pls_golite062009
  • binding
  • 3.03029468866374 bayes_pls_golite062009
  • mRNA binding
  • 2.96669269799942 bayes_pls_golite062009
  • transcription regulator activity
  • 1.94297875367222 bayes_pls_golite062009
  • DNA binding
  • 1.62328996594128 bayes_pls_golite062009
  • transcription repressor activity
  • 1.56066397370123 bayes_pls_golite062009
  • protein binding
  • 1.16541072642796 bayes_pls_golite062009
  • signal transducer activity
  • 1.00684766673868 bayes_pls_golite062009
  • molecular transducer activity
  • 1.00684766673868 bayes_pls_golite062009
  • transcription factor activity
  • 0.687475481524107 bayes_pls_golite062009
  • catalytic activity
  • 0.113112541746059 bayes_pls_golite062009
  • 0.0350881281129536 bayes_pls_golite062009
    11 No functions predicted.
    12 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle