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Protein Overview: RET1

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Riffle et al. (2010) (Unpublished Data) ISW1 RET1 RPA135 RPA190 RPA49 RPB10 RPB5 RPB8 RPC11 RPC17 RPC19 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO26 RPO31
View Details (MIPS) Mewes HW, et al. (2004) RET1 RPB10 RPB5 RPB8 RPC10 RPC19 RPC25 RPC31 RPC34 RPC40 RPC82 RPO26 RPO31
View Details Krogan NJ, et al. (2006) BDP1 CDC14 COY1 FAR7 MAF1 RET1 RPA12 RPA135 RPA14 RPA190 RPA34 RPA43 RPA49 RPC10 RPC11 RPC17 RPC19 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO31 YDL144C YIR024C
View Details Gavin AC, et al. (2006) RET1 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO31
View Details Gavin AC, et al. (2002) AMS1 ASC1 CAB3 CDC14 CHD1 CKA1 CKA2 CKB1 CKB2 DHH1 DPB2 DPB4 FBA1 HHF1, HHF2 HOT1 ISW1 ISW2 KAP114 MAF1 MOT1 NAP1 NIP1 NPL6 POL2 PRT1 PUF6 RET1 RPA12 RPA135 RPA190 RPA43 RPA49 RPB10 RPB5 RPB8 RPC11 RPC17 RPC19 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPG1 RPO26 RPO31 RSC8 RVB2 SPT16 SRO7 SSA4 STH1 TIF35 TOP1 UTP22 VPS1 YTA7
View Details Ho Y, et al. (2002) ACC1 ACH1 ADH2 ADR1 AI1 AIM13 FUN12 GCD11 GFA1 GND1 GUS1 HHF1, HHF2 HHO1 HIR2 HTA1 HTB1 IDH2 IMD2 IMD3 IMD4 ISA2 KAP114 KRI1 MAG1 MDH1 MET18 MPH1 MSH2 NAP1 NGL2 NOP12 NOP4 NOP7 PYC1 PYC2 RET1 RPA12 RPA135 RPA190 RPA49 RPB5 RPC19 RPC25 RPC34 RPC40 RPC82 RPN3 RPO26 RPO31 RVS167 SEC27 SPT16 SXM1 TBS1 TFP1 TIF4631 TIF4632 TSA2 UTP13 UTP22 YFL042C YHR112C YPR015C
View Details Qiu et al. (2008) RET1 RPA12 RPA190 RPA34 RPA43 RPB10 RPB2 RPB3 RPB5 RPB7 RPB8 RPB9 RPC10 RPC11 RPC17 RPC19 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO21 RPO26 RPO31

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen MET30 RET1 2 Unpublished Fields Lab Data
View Screen NPA3 RET1 2 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data RET1 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..202]
[369..526]
[573..682]
PSI-BLAST 11000.0 RBP2
2 View Details [203..368]
[527..572]
[683..1060]
PSI-BLAST 11000.0 RBP2
3 View Details [1061..1149] PSI-BLAST 11000.0 RBP2

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • DNA-directed RNA polymerase activity
  • 10.2021663255698 bayes_pls_golite062009
  • RNA polymerase activity
  • 10.2021663255698 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 7.6240729546188 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 6.31198922553685 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 5.44374972993429 bayes_pls_golite062009
  • transferase activity
  • 4.83218811360621 bayes_pls_golite062009
  • transcription regulator activity
  • 2.34884279395902 bayes_pls_golite062009
  • nucleic acid binding
  • 2.33174616086951 bayes_pls_golite062009
  • DNA binding
  • 2.27079409864244 bayes_pls_golite062009
  • binding
  • 1.73416306650822 bayes_pls_golite062009
  • RNA polymerase II transcription mediator activity
  • 1.53259746846673 bayes_pls_golite062009
  • catalytic activity
  • 1.36406839864424 bayes_pls_golite062009
  • RNA binding
  • 1.12618950637766 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.847783043631028 bayes_pls_golite062009
  • protein binding
  • 0.45174975126993 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle