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Protein Overview: RPB7

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data RPB7 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..79] PSI-BLAST 116.228787 C-terminal domain of RNA polymerase II subunit RBP4 (RpoE); N-terminal, heterodimerisation domain of RBP4 (RpoE)
2 View Details [80..171] PSI-BLAST 116.228787 C-terminal domain of RNA polymerase II subunit RBP4 (RpoE); N-terminal, heterodimerisation domain of RBP4 (RpoE)

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA polymerase activity
  • 8.99678434167899 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 8.99678434167899 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 6.44182740737882 bayes_pls_golite062009
  • structural constituent of ribosome
  • 5.1118741250402 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 4.85462508375149 bayes_pls_golite062009
  • structural molecule activity
  • 4.51553901145182 bayes_pls_golite062009
  • transferase activity
  • 3.90847350895308 bayes_pls_golite062009
  • ribonuclease activity
  • 3.83159232224897 bayes_pls_golite062009
  • DNA binding
  • 3.53568546959418 bayes_pls_golite062009
  • RNA binding
  • 3.49834780836233 bayes_pls_golite062009
  • 2.80746531284205 bayes_pls_golite062009
  • nucleic acid binding
  • 2.41557476646435 bayes_pls_golite062009
  • exoribonuclease activity
  • 2.41262897171619 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 2.38378389593693 bayes_pls_golite062009
  • transcription regulator activity
  • 2.10110937001387 bayes_pls_golite062009
  • binding
  • 1.9712766790272 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.81524862921454 bayes_pls_golite062009
  • mRNA binding
  • 1.660993824641 bayes_pls_golite062009
  • single-stranded DNA binding
  • 1.62996999055328 bayes_pls_golite062009
  • protein binding
  • 1.55473080522232 bayes_pls_golite062009
  • translation regulator activity
  • 1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 1.40718318783582 bayes_pls_golite062009
  • translation initiation factor activity
  • 1.27539679024898 bayes_pls_golite062009
  • transcription activator activity
  • 1.09079153283893 bayes_pls_golite062009
  • catalytic activity
  • 1.02941336036162 bayes_pls_golite062009
  • transcription factor activity
  • 0.937752547283357 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.85691075793641 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 0.83268201349295 bayes_pls_golite062009
  • hydrolase activity
  • 0.724860465280978 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.583085644017496 bayes_pls_golite062009
  • nuclease activity
  • 0.57381531077345 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 0.47336621289748 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 0.223941674251642 bayes_pls_golite062009
    2 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle