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Bait Protein: RPA135
Organism: Saccharomyces cerevisiae
Publication: Schneider DA, French SL, Osheim YN, Bailey AO, Vu L, Dodd J, Yates JR, Beyer AL, Nomura M. RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing. Proc Natl Acad Sci U S A. 2006;103(34):12707-12.
Comments: his-HA tag on RPA135

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  Hit Protein Protein Desc Sequence Count Spectrum Count Sequence Coverage NSAF Mol. Wt.
[View Peptides]   RPC19 RNA polymerase subunit AC19, common to RNA polymerases I and III 11 30 94.4% 0.0302 16151
[View Peptides]   RPC40 RNA polymerase subunit AC40, common to RNA polymerase I and III 33 77 79.4% 0.0329 37687
[View Peptides]   RPB10 RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III 5 8 71.4% 0.0164 8278
[View Peptides]   RPB11 RNA polymerase II subunit B12.5; part of central core; similar to Rpc19p and bacterial alpha subunit 9 10 70.0% 0.0119 13616
[View Peptides]   RPA190 RNA polymerase I largest subunit A190 128 262 67.1% 0.0225 186431
[View Peptides]   RPA49 RNA polymerase I subunit A49 39 62 65.5% 0.0214 46651
[View Peptides]   RPB4 RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; involved recruitmen... 12 22 65.2% 0.0142 25414
[View Peptides]   RPA34 RNA polymerase I subunit A34.5 21 28 61.4% 0.0172 26875
[View Peptides]   SUP35 Translation termination factor eRF3; altered protein conformation creates the [PSI(+)] prion, a domi... 53 90 59.9% 0.0188 76551
[View Peptides]   RPA14 RNA polymerase I subunit A14 8 8 59.1% 0.00836 14585
[View Peptides]   RPB7 RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p; involved recruitmen... 5 6 58.5% 0.00502 19058
[View Peptides]   RPA12 RNA polymerase I subunit A12.2; contains two zinc binding domains, and the N terminal domain is resp... 7 39 57.6% 0.0446 13661
[View Peptides]   RPA135 RNA polymerase I second largest subunit A135 77 137 56.9% 0.0163 135742
[View Peptides]   SPT4 Protein involved in the regulating Pol I and Pol II transcription, pre-mRNA processing, kinetochore ... 6 11 54.9% 0.0154 11158
[View Peptides]   DDR48 DNA damage-responsive protein, expression is increased in response to heat-shock stress or treatment... 12 16 54.0% 0.00532 46233
[View Peptides]   SPT5 Protein involved in regulating Pol I and Pol II transcription and pre-mRNA processing; forms a compl... 72 119 53.9% 0.016 115650
[View Peptides]   RPB2 RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subun... 78 118 52.5% 0.0138 138751
[View Peptides]   RPO21 RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapep... 79 121 52.2% 0.00999 191610
[View Peptides]   RPB3 RNA polymerase II third largest subunit B44, part of central core; similar to prokaryotic alpha subu... 14 25 49.1% 0.0112 35298
[View Peptides]   RPA43 RNA polymerase I subunit A43 17 40 48.5% 0.0176 36224
[View Peptides]   RPB5 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III; contacts DNA and affects tra... 13 36 45.6% 0.024 25079
[View Peptides]   ENO2 Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosp... 12 16 45.5% 0.00524 46914
[View Peptides]   RPO26 RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; simila... 5 14 45.2% 0.0129 17910
[View Peptides]   YPR137C-A, YAR010C Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 12 20 40.5% 0.0065 49072
[View Peptides]   YDR261C-C Retrotransposon TYA Gag gene co-transcribed with TYB Pol; in YDRCTY1-3 TYB is mutant and probably no... 12 20 40.5% 0.0065 49009
[View Peptides]   YDR365W-A, YPL25... Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 12 20 40.5% 0.0065 48953
[View Peptides]   YGR027W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 12 20 40.5% 0.0065 49056
[View Peptides]   YDR365W-A, YPL25... Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 12 20 40.5% 0.0065 48953
[View Peptides]   SSE1 ATPase that is a component of the heat shock protein Hsp90 chaperone complex; binds unfolded protein... 21 27 39.5% 0.00557 77367
[View Peptides]   SSC1 Hsp70 family ATPase, constituent of the import motor component of the Translocase of the Inner Mitoc... 23 29 38.5% 0.00634 70628
[View Peptides]   ENO1 Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosph... 10 14 38.0% 0.00458 46816
[View Peptides]   PIN3 Protein that induces appearance of [PIN+] prion when overproduced 4 6 36.7% 0.00399 23539
[View Peptides]   YDR210C-C Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 11 19 35.7% 0.00618 49187
[View Peptides]   YER159C-A, YDR31... Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 11 19 35.7% 0.00618 49129
[View Peptides]   YER159C-A, YDR31... Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 11 19 35.7% 0.00618 49129
[View Peptides]   YDR098C-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 11 19 35.7% 0.00618 49057
[View Peptides]   SNC2 Vesicle membrane receptor protein (v-SNARE) involved in the fusion between Golgi-derived secretory v... 2 2 35.7% 0.00249 12957
[View Peptides]   DEF1 RNAPII degradation factor, forms a complex with Rad26p in chromatin, enables ubiquitination and prot... 26 49 33.9% 0.0095 83973
[View Peptides]   PDC1 Major of three pyruvate decarboxylase isozymes, key enzyme in alcoholic fermentation, decarboxylates... 11 11 33.4% 0.0028 61495
[View Peptides]   MGE1 Mitochondrial matrix cochaperone, acts as a nucleotide release factor for Ssc1p in protein transloca... 3 3 33.3% 0.00188 26066
[View Peptides]   RIM1 Single-stranded DNA-binding protein essential for mitochondrial genome maintenance; involved in mito... 3 4 33.3% 0.00424 15386
[View Peptides]   YGR038C-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 10 17 33.0% 0.00553 49034
[View Peptides]   HHF1, HHF2 Histone H4, core histone protein required for chromatin assembly and chromosome function; one of two... 2 2 32.0% 0.00278 11368
[View Peptides]   HHF1, HHF2 Histone H4, core histone protein required for chromatin assembly and chromosome function; one of two... 2 2 32.0% 0.00278 11368
[View Peptides]   RPP2A Ribosomal protein P2 alpha, a component of the ribosomal stalk, which is involved in the interaction... 4 4 31.1% 0.0054 10746
[View Peptides]   YBR012W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 10 18 29.3% 0.00585 49068
[View Peptides]   ACT1 Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functio... 5 6 28.8% 0.00229 41690
[View Peptides]   HTA2 Histone H2A, core histone protein required for chromatin assembly and chromosome function; one of tw... 3 3 28.0% 0.00325 13989
[View Peptides]   HTA1 Histone H2A, core histone protein required for chromatin assembly and chromosome function; one of tw... 3 3 28.0% 0.00325 13989
[View Peptides]   RPB8 RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III 5 5 26.0% 0.0049 16511
[View Peptides]   KAR2 ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding i... 9 9 24.0% 0.00189 74468
[View Peptides]   KAR2 ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding i... 9 9 24.0% 0.00189 74468
[View Peptides]   RPB9 RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site selection a... 2 2 23.8% 0.00235 14288
[View Peptides]   SEC17 Peripheral membrane protein required for vesicular transport between ER and Golgi, the 'priming' ste... 4 5 23.6% 0.00245 32803
[View Peptides]   RPP0 Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphoryl... 7 7 23.4% 0.00321 33717
[View Peptides]   YEL007W Putative protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1) 9 11 23.0% 0.00236 72534
[View Peptides]   LAT1 Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex, which catalyzes... 7 7 22.2% 0.00208 51818
[View Peptides]   HTB2 Histone H2B, core histone protein required for chromatin assembly and chromosome function; nearly id... 2 2 22.1% 0.00218 14237
[View Peptides]   HTB1 Histone H2B, core histone protein required for chromatin assembly and chromosome function; nearly id... 2 2 22.1% 0.00218 14252
[View Peptides]   TEF1, TEF2 Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction ... 6 7 21.8% 0.00219 50033
[View Peptides]   TEF1, TEF2 Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction ... 6 7 21.8% 0.00219 50033
[View Peptides]   RNQ1 [PIN(+)] prion, an infectious protein conformation that is generally an ordered protein aggregate 4 6 21.2% 0.00212 42580
[View Peptides]   SEC18 ATPase required for vesicular transport between ER and Golgi, the 'priming' step in homotypic vacuol... 9 9 21.1% 0.0017 84056
[View Peptides]   RPP1A Ribosomal stalk protein P1 alpha, involved in the interaction between translational elongation facto... 2 2 20.8% 0.0027 10908
[View Peptides]   RPP2B Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction ... 2 2 20.0% 0.0026 11050
[View Peptides]   YCL020W Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 6 10 18.0% 0.00327 49841
[View Peptides]   PIN4 Protein involved in G2/M phase progression and response to DNA damage, interacts with Rad53p; contai... 6 7 17.5% 0.0015 73776
[View Peptides]   GPM1 Tetrameric phosphoglycerate mutase, mediates the conversion of 3-phosphoglycerate to 2-phosphoglycer... 2 2 17.0% 0.00116 27609
[View Peptides]   YAK1 Serine-threonine protein kinase that is part of a glucose-sensing system involved in growth control ... 7 7 16.7% 0.00124 91245
[View Peptides]   YDR261C-D Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional 16 24 16.6% 0.00214 181660
[View Peptides]   SOK2 Nuclear protein that plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA)... 6 6 16.6% 0.00109 85643
[View Peptides]   YER138C Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 17 25 16.5% 0.00204 198561
[View Peptides]   ATP2 Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily c... 4 4 16.2% 0.00112 54794
[View Peptides]   ATP1 Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily ... 5 5 15.8% 0.00131 58618
[View Peptides]   MCA1 Putative cysteine protease similar to mammalian caspases; involved in regulation of apoptosis upon h... 4 5 15.7% 0.00158 50649
[View Peptides]   YPL247C Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... 4 6 15.5% 0.00164 57324
[View Peptides]   YER160C Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 16 24 15.3% 0.00196 198568
[View Peptides]   BRE5 Ubiquitin protease cofactor, forms deubiquitination complex with Ubp3p that coregulates anterograde ... 5 5 15.3% 0.00139 57674
[View Peptides]   YEF3 Translational elongation factor 3, stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes b... 7 7 15.2% 9.59E-4 115945
[View Peptides]   YDR210W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 5 9 15.1% 0.00294 49835
[View Peptides]   YOR192C-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 5 9 15.1% 0.00294 49736
[View Peptides]   YDR261W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 5 9 15.1% 0.00294 49724
[View Peptides]   SSO1 Plasma membrane t-SNARE involved in fusion of secretory vesicles at the plasma membrane and in vesic... 2 2 14.8% 9.87E-4 33106
[View Peptides]   PSP1 Asn and gln rich protein of unknown function; high-copy suppressor of POL1 (DNA polymerase alpha) an... 7 7 14.6% 0.00119 95348
[View Peptides]   YGR027W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 15 22 14.5% 0.00179 198656
[View Peptides]   CDC19 Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvat... 7 7 14.4% 0.002 54545
[View Peptides]   YDJ1 Protein chaperone involved in regulation of the HSP90 and HSP70 functions; involved in protein trans... 3 3 14.4% 0.00105 44671
[View Peptides]   HSC82 Cytoplasmic chaperone of the Hsp90 family, redundant in function and nearly identical with Hsp82p, a... 6 6 14.2% 0.00122 80900
[View Peptides]   YFL002W-B, YGR161W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 5 9 14.2% 0.00294 49762
[View Peptides]   YFL002W-B, YGR161W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 5 9 14.2% 0.00294 49762
[View Peptides]   YDR210C-D Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 15 23 14.0% 0.00188 198838
[View Peptides]   YDR316W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 15 23 14.0% 0.00188 198526
[View Peptides]   PGK1 3-phosphoglycerate kinase, catalyzes transfer of high-energy phosphoryl groups from the acyl phospha... 3 4 13.9% 0.00138 44738
[View Peptides]   YDR365W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 15 23 13.8% 0.00188 198658
[View Peptides]   YBR012W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 15 23 13.7% 0.00187 198868
[View Peptides]   IBI2 Protein of unknown function that associates with ribosomes; green fluorescent protein (GFP)-fusion p... 2 2 13.7% 0.00145 22179
[View Peptides]   PDB1 E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, which is an evolutionarily-conserved mu... 2 2 13.4% 7.82E-4 40054
[View Peptides]   AHA1 Co-chaperone that binds to Hsp82p and activates its ATPase activity; similar to Hch1p; expression is... 3 3 13.1% 0.00123 39436
[View Peptides]   YBL100W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 4 5 13.0% 0.00163 49898
[View Peptides]   YLR410W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 4 5 13.0% 0.00163 49772
[View Peptides]   FAS1 Beta subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty a... 18 18 12.8% 0.00126 228689
[View Peptides]   YDR098C-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 14 22 12.8% 0.00179 198594
[View Peptides]   DED1 ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, required for translation initiation of all ye... 3 3 12.7% 7.11E-4 65553
[View Peptides]   FAS2 Alpha subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty ... 12 13 12.2% 9.86E-4 206945
[View Peptides]   YGR038C-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 13 20 12.1% 0.00163 198520
[View Peptides]   YBL005W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 3 4 12.0% 0.0013 49285
[View Peptides]   PIL1 Primary component of eisosomes, which are large immobile cell cortex structures associated with endo... 2 2 11.8% 8.44E-4 38349
[View Peptides]   PDA1 E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex, catalyzes the direct oxidative decarbo... 2 2 11.7% 6.81E-4 46343
[View Peptides]   CHC1 Clathrin heavy chain, subunit of the major coat protein involved in intracellular protein transport ... 10 11 11.1% 9.52E-4 187233
[View Peptides]   YER159C-A, YDR31... Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 2 2 11.1% 6.5E-4 49129
[View Peptides]   PAN2 Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tai... 8 9 11.0% 0.00115 127039
[View Peptides]   HSP60 Tetradecameric mitochondrial chaperonin required for ATP-dependent folding of precursor polypeptides... 5 5 11.0% 0.00125 60752
[View Peptides]   SFB3 Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat, required for cargo selection du... 3 3 10.9% 4.62E-4 103950
[View Peptides]   FKS1 Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic sub... 11 13 10.6% 9.92E-4 214849
[View Peptides]   HSP82 Hsp90 chaperone required for pheromone signaling and negative regulation of Hsf1p; docks with Tom70p... 4 4 10.6% 8.07E-4 81406
[View Peptides]   GPH1 Non-essential glycogen phosphorylase required for the mobilization of glycogen, activity is regulate... 6 6 10.3% 9.52E-4 103275
[View Peptides]   PBP1 Component of glucose deprivation induced stress granules, involved in P-body-dependent granule assem... 4 4 10.1% 7.93E-4 78782
[View Peptides]   YDR034C-C Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 3 4 10.0% 0.00131 49689
[View Peptides]   YOR343W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 3 4 10.0% 0.00131 49868
[View Peptides]   YBL005W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 8 9 9.9% 7.34E-4 198968
[View Peptides]   PAN3 Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tai... 4 4 9.6% 8.43E-4 76455
[View Peptides]   YJR028W Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 2 2 9.5% 6.5E-4 49112
[View Peptides]   YLR227W-A, YML04... Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 2 2 9.5% 6.5E-4 48993
[View Peptides]   YOL103W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 2 2 9.5% 6.5E-4 49005
[View Peptides]   YLR227W-A, YML04... Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 2 2 9.5% 6.5E-4 48993
[View Peptides]   YLR256W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 2 2 9.5% 6.5E-4 49003
[View Peptides]   YLR227W-A, YML04... Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 2 2 9.5% 6.5E-4 48993
[View Peptides]   YDR365W-A, YPL25... Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 2 2 9.5% 6.5E-4 48953
[View Peptides]   NSP1 Essential component of the nuclear pore complex, which mediates nuclear import and export, found in ... 3 3 9.4% 5.22E-4 86516
[View Peptides]   YMR046C Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ... 2 2 9.3% 6.5E-4 49274
[View Peptides]   YGR161C-D Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 7 7 9.2% 5.71E-4 198558
[View Peptides]   NGR1 RNA binding protein that negatively regulates growth rate; interacts with the 3' UTR of the mitochon... 3 3 9.1% 6.39E-4 75024
[View Peptides]   CTS2 Protein similar to Ashbya gossypii sporulation-specific chitinase 2 2 9.0% 5.6E-4 59118
[View Peptides]   PDC5 Minor isoform of pyruvate decarboxylase, key enzyme in alcoholic fermentation, decarboxylates pyruva... 3 3 8.7% 7.62E-4 61912
[View Peptides]   SAN1 Ubiquitin-protein ligase, involved in the proteasome-dependent degradation of aberrant nuclear prote... 3 4 8.2% 9.38E-4 65618
[View Peptides]   NRP1 Putative RNA binding protein of unknown function; localizes to stress granules induced by glucose de... 3 3 8.1% 5.97E-4 79299
[View Peptides]   YJR029W Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 6 6 8.0% 4.89E-4 198616
[View Peptides]   YML039W Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 6 6 8.0% 4.89E-4 198571
[View Peptides]   LSB1 Protein containing an N-terminal SH3 domain; binds Las17p, which is a homolog of human Wiskott-Aldri... 2 2 7.9% 0.00119 26139
[View Peptides]   YHR214C-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 6 6 7.4% 4.79E-4 202816
[View Peptides]   RFA1 Subunit of heterotrimeric Replication Protein A (RPA), which is a highly conserved single-stranded D... 3 3 7.4% 6.91E-4 70348
[View Peptides]   GSC2 Catalytic subunit of 1,3-beta-glucan synthase, involved in formation of the inner layer of the spore... 8 10 7.1% 7.55E-4 216988
[View Peptides]   NRD1 RNA-binding protein that interacts with the C-terminal domain of the RNA polymerase II large subunit... 2 2 7.1% 4.98E-4 63859
[View Peptides]   VPS1 Dynamin-like GTPase required for vacuolar sorting; also involved in actin cytoskeleton organization,... 4 4 7.0% 8.13E-4 78736
[View Peptides]   PUF4 Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that ... 3 3 6.9% 4.83E-4 97798
[View Peptides]   YML045W Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 5 5 6.8% 4.08E-4 198524
[View Peptides]   YMR045C Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 5 5 6.7% 4.08E-4 198898
[View Peptides]   POR1 Mitochondrial porin (voltage-dependent anion channel), outer membrane protein required for the maint... 2 2 6.7% 0.00101 30428
[View Peptides]   YJR027W Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 5 5 6.6% 4.08E-4 198651
[View Peptides]   YLR157C-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 5 5 6.6% 4.08E-4 198544
[View Peptides]   YLR227W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 5 5 6.6% 4.08E-4 198404
[View Peptides]   PDC6 Minor isoform of pyruvate decarboxylase, decarboxylates pyruvate to acetaldehyde, involved in amino ... 2 2 6.6% 5.08E-4 61581
[View Peptides]   YCL019W Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 8 12 6.4% 9.7E-4 202095
[View Peptides]   ARO1 Pentafunctional arom protein, catalyzes steps 2 through 6 in the biosynthesis of chorismate, which i... 5 5 5.9% 4.51E-4 174754
[View Peptides]   CBK1 Serine/threonine protein kinase that regulates cell morphogenesis pathways; involved in cell wall bi... 2 2 5.8% 3.79E-4 86946
[View Peptides]   YDR210W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 7 11 5.7% 8.89E-4 202094
[View Peptides]   YDR261W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 7 11 5.7% 8.89E-4 201961
[View Peptides]   YAR009C Retrotransposon TYA Gag and TYB Pol genes; in YARCTY1-1 TYB is mutant and probably non-functional 3 3 5.7% 3.59E-4 136732
[View Peptides]   YFL002W-A, YGR161W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 7 11 5.5% 8.89E-4 202038
[View Peptides]   YFL002W-A, YGR161W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 7 11 5.5% 8.89E-4 202038
[View Peptides]   YBL100W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 6 7 5.2% 5.66E-4 202214
[View Peptides]   SEC27 Essential beta'-coat protein of the COPI coatomer, involved in ER-to-Golgi and Golgi-to-ER transport... 2 2 5.2% 3.22E-4 99445
[View Peptides]   SDH1 Flavoprotein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxid... 2 2 5.2% 4.47E-4 70229
[View Peptides]   YMR050C Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 4 4 5.1% 3.26E-4 198554
[View Peptides]   MKT1 Protein that forms a complex with Pbp1p that may mediate posttranscriptional regulation of HO endonu... 2 2 5.1% 3.45E-4 94494
[View Peptides]   ENT2 Epsin-like protein required for endocytosis and actin patch assembly and functionally redundant with... 2 2 5.1% 4.67E-4 71807
[View Peptides]   YOR192C-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 6 10 4.9% 8.08E-4 201983
[View Peptides]   YLR035C-A Retrotransposon TYA Gag and TYB Pol genes; polyprotein is processed to make a nucleocapsid-like prot... 2 2 4.7% 2.48E-4 131617
[View Peptides]   SEC23 GTPase-activating protein, stimulates the GTPase activity of Sar1p; component of the Sec23p-Sec24p h... 2 2 4.6% 3.73E-4 85385
[View Peptides]   YDR034C-D Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 5 6 4.5% 4.85E-4 201964
[View Peptides]   YLR410W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 5 6 4.4% 4.85E-4 202121
[View Peptides]   SSE2 Member of the heat shock protein 70 (HSP70) family; may be involved in protein folding; localized to... 2 4 4.3% 8.26E-4 77621
[View Peptides]   ECM10 Heat shock protein of the Hsp70 family, localized in mitochondrial nucleoids, plays a role in protei... 2 3 4.3% 6.67E-4 70085
[View Peptides]   NEO1 Putative aminophospholipid translocase (flippase) involved in endocytosis and vacuolar biogenesis; l... 3 3 4.2% 3.73E-4 130218
[View Peptides]   CDC48 ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97; in a complex with Npl4p a... 2 2 4.2% 3.43E-4 91996
[View Peptides]   CDC39 Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regu... 3 3 3.9% 2.04E-4 240277
[View Peptides]   YNL054W-B TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are req... 3 3 3.9% 2.45E-4 198197
[View Peptides]   YOL103W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 3 3 3.9% 2.45E-4 198613
[View Peptides]   KRE6 Protein required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; appears functional... 2 2 3.9% 3.97E-4 80123
[View Peptides]   VMA2 Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), a... 2 2 3.9% 5.54E-4 57749
[View Peptides]   YOR343W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 4 5 3.7% 4.04E-4 202160
[View Peptides]   JSN1 Member of the Puf family of RNA-binding proteins, interacts with mRNAs encoding membrane-associated ... 2 2 3.7% 2.62E-4 120374
[View Peptides]   SEC16 COPII vesicle coat protein required for ER transport vesicle budding; Sec16p is bound to the periphe... 3 3 3.6% 1.96E-4 241694
[View Peptides]   SEC31 Component of the Sec13p-Sec31p complex of the COPII vesicle coat, required for vesicle formation in ... 3 3 3.5% 3.37E-4 138703
[View Peptides]   NAB3 Single stranded RNA binding protein; acidic ribonucleoprotein; required for termination of non-poly(... 2 3 3.1% 5.35E-4 90439
[View Peptides]   YNL284C-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 2 2 2.7% 1.63E-4 198997
[View Peptides]   YOR142W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 2 2 2.7% 1.63E-4 198535
[View Peptides]   NUP116 Subunit of the Nup82 subcomplex of the nuclear pore complex; localized to both sides of the pore; co... 2 2 2.7% 2.57E-4 116234
[View Peptides]   PAN1 Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p, associates with actin patches on th... 2 2 2.6% 1.93E-4 160266
[View Peptides]   ACC1 Acetyl-CoA carboxylase, biotin containing enzyme that catalyzes the carboxylation of acetyl-CoA to f... 3 3 2.5% 1.92E-4 250351
[View Peptides]   URA2 Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate transcarbamylase (ATCase), catalyzes t... 2 2 1.3% 1.29E-4 245123

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle