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Protein Overview: DBP3

General Information:
Name(s) found: DBP3 / YGL078C [SGD]
Description(s) found:
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  • gi|6321360|ref|NP_011437.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; Dbp3p [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S30805 probable RNA helicase CA3 - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|172582|gb|AAA73137.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1708151|sp|P20447.2|DBP3_YEAST RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD box protein 3; AltName: Full=Helicase CA3 [NCBI NR]
  • gi|1322595|emb|CAA96783.1| DBP3 [Saccharomyces cerevisiae] [NCBI NR]
  • ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae GN=DBP3 PE=1 SV=2 [Swiss-Prot]
  • DBP3 Putative RNA helicase required for pre-rRNA processing [mips]
  • Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis [SGD]
  • DBP3, Chr VII from 360286-361857, reverse complement [yeast_orfs2]
  • Chr VII from 360286-361857, reverse complement [yeastorf3.fasta]
  • Chr VII from 360289-361860, reverse complement [yeastorf4.fasta]
  • Chr VII from 361860-360289, reverse complement [yeastorf5.fasta]
  • (P20447) Probable ATP-dependent RNA helicase DBP3 (Helicase CA3) [4932.FASTACCERV.txt]
  • DBP3 SGDID:S0003046, Chr VII from 361860-360289, reverse complement, Verified ORF [yeastflysequest.fasta]
  • DBP3 SGDID:S0003046, Chr VII from 361862-360291, reverse complement, Verified ORF [10112005cervSGD.fasta]
  • Dbp3p [Saccharomyces cerevisiae]gi|1322595|emb|CAA96783.1| DBP3 [Saccharomyces cerevisiae]gi|320699|pir||S30805 probable RNA helicase CA3 - yeast (Saccharomyces cerevisiae)gi|172582|gb|AAA73137.1| [Saccharomyces cerevisiae gene, complete cds.], gene pr [nrdb_11152004_Chlamydomonas]
  • DBP3 SGDID:S000003046, Chr VII from 361862-360291, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; Dbp3p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [Saccharomyces cerevisiae gene, complete cds.], gene product [nr-271106-contam.fasta]
  • ATP-dependent RNA helicase DBP3 (DEAD box protein 3) (Helicase CA3) [nr-271106-contam.fasta]
  • DBP3 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DBP3 PE=1 SV=2 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • DBP3 SGDID:S000003046, Chr VII from 361859-360288, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis" [yeast-030211-contam.fasta]
  • DBP3 SGDID:S000003046, Chr VII from 361859-360288, Genome Release 64-2-1, reverse complement, Verified ORF, "RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype" [20141208_orf_trans.fasta]
  • YGL078C SGDID:S000003046, Chr VII from 361859-360288, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 523 amino acids

    Gene Ontology:
    Cellular Component: nuclear outer membrane [IMPLink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: ribosomal large subunit assembly [IMPLink to PubMed article]
    Molecular Function: ATP-dependent RNA helicase activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKEEIADKK RKVVDEEVIE KKKSKKHKKD KKDKKEKKDK KHKKHKKEKK GEKEVEVPEK  60
   61 ESEKKPEPTS AVASEFYVQS EALTSLPQSD IDEYFKENEI AVEDSLDLAL RPLLSFDYLS 120
  121 LDSSIQAEIS KFPKPTPIQA VAWPYLLSGK DVVGVAETGS GKTFAFGVPA ISHLMNDQKK 180
  181 RGIQVLVISP TRELASQIYD NLIVLTDKVG MQCCCVYGGV PKDEQRIQLK KSQVVVATPG 240
  241 RLLDLLQEGS VDLSQVNYLV LDEADRMLEK GFEEDIKNII RETDASKRQT LMFTATWPKE 300
  301 VRELASTFMN NPIKVSIGNT DQLTANKRIT QIVEVVDPRG KERKLLELLK KYHSGPKKNE 360
  361 KVLIFALYKK EAARVERNLK YNGYNVAAIH GDLSQQQRTQ ALNEFKSGKS NLLLATDVAA 420
  421 RGLDIPNVKT VINLTFPLTV EDYVHRIGRT GRAGQTGTAH TLFTEQEKHL AGGLVNVLNG 480
  481 ANQPVPEDLI KFGTHTKKKE HSAYGSFFKD VDLTKKPKKI TFD

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) COQ10 DBP3 DSE4 GAR1 KRI1 KRR1 NHP2 NOP10 NOP6 YCR016W YDR381C-A
    View Details Qiu et al. (2008) BFR2 BRX1 DBP10 DBP2 DBP3 DBP6 DBP7 DBP8 DBP9 DHR2 DRS1 ECM16 ERB1 GAR1 HAS1 HCA4 KRI1 KRR1 MAK5 MTR4 NOC3 NOG2 NOP12 NOP13 NOP15 NOP4 NOP7 NSR1 NUG1 PRP43 PXR1 RNT1 ROK1 RPF2 RRP1 RRP3 RRP8 SOF1 SPB4 UTP10 UTP13 UTP15 UTP4 UTP5 UTP6 UTP8 UTP9 YBL028C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run HSL7 No Comments McCusker D, et al (2007)
    View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
    View Run VAM3 Sample: HX12 - trans-SNARE complex formation and fusion are inhibited (control). Hao Xu, et al. (2010)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #13 Mitotic Prep2-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen ATG12 DBP3 2 Unpublished Fields Lab Data
    View Screen THG1 DBP3 1 Hazbun TR, et al. (2003)
    View Screen SPT23 DBP3 1 Unpublished Fields Lab Data
    View Screen SPT21 DBP3 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data DBP3 Huh WK, et al. (2003)
    View Data DBP3 and NOP56 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] deduced N/A No confident structure predictions are available.
    2 View Details [79..324] PSI-BLAST 636.9794 Putative DEAD box RNA helicase
    3 View Details [325..523] PSI-BLAST 636.9794 Putative DEAD box RNA helicase


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle