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Protein Overview: ECM2

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CWC2 No Comments Hazbun TR, et al. (2003)
View Run SPP382 No Comments Hazbun TR, et al. (2003)
View Run SPP382 No Comments Hazbun TR, et al. (2003)
View Run CWC25 No Comments Hazbun TR, et al. (2003)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen URN1 ECM2 2 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data ECM2 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..91] deduced N/A No confident structure predictions are available.
2 View Details [92..198] PSI-BLAST 48.154902 Poly(A)-binding protein
3 View Details [199..287] PSI-BLAST 48.154902 Poly(A)-binding protein
4 View Details [288..364] PSI-BLAST 52.221849 Nuclear ribonucleoprotein A1 (RNP A1, UP1)

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • binding
  • 1.74860109511336 bayes_pls_golite062009
  • catalytic activity
  • 0.223774911842048 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
  • 6.73097473547076 bayes_pls_golite062009
  • 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
  • 5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
  • 3.81920018903278 bayes_pls_golite062009
  • binding
  • 3.49612884560266 bayes_pls_golite062009
  • snRNA binding
  • 3.28448936696877 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.93798024346416 bayes_pls_golite062009
  • U1 snRNA binding
  • 2.26303528058407 bayes_pls_golite062009
  • protein binding
  • 1.32954276279597 bayes_pls_golite062009
  • structural molecule activity
  • 1.29928829870122 bayes_pls_golite062009
  • transcription regulator activity
  • 1.07788694919471 bayes_pls_golite062009
  • DNA binding
  • 0.978604858165557 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.591700155096213 bayes_pls_golite062009
  • transcription factor activity
  • 0.234742017105535 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle