YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: LIN1

General Information:
Name(s) found: LIN1 / YHR156C [SGD]
Description(s) found:
SHOW ONLY BEST
  • gi|731731|sp|P38852.1|LIN1_YEAST RecName: Full=Protein LIN1 [NCBI NR]
  • gi|6321950|ref|NP_012026.1| Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication; Lin1p [Saccharomyces ce [NCBI NR]
  • pir||S46768 hypothetical protein YHR156c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|500664|gb|AAB68990.1| Yhr156cp [Saccharomyces cerevisiae] [NCBI NR]
  • gi|45269653|gb|AAS56207.1| YHR156C [Saccharomyces cerevisiae] [NCBI NR]
  • Protein LIN1 OS=Saccharomyces cerevisiae GN=LIN1 PE=1 SV=1 [Swiss-Prot]
  • LIN1 Nuclear protein that physically interacts with Irr1p, a component of the cohesin complex [mips]
  • Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication [SGD]
  • YHR156C, Chr VIII from 411385-412407, reverse complement [yeast_orfs2]
  • Chr VIII from 411385-412407, reverse complement [yeastorf3.fasta]
  • Chr VIII from 412407-411385, reverse complement [yeastorf5.fasta]
  • (P38852) Protein LIN1 [4932.FASTACCERV.txt]
  • LIN1 SGDID:S0001199, Chr VIII from 412407-411385, reverse complement, Verified ORF [yeastflysequest.fasta]
  • LIN1 SGDID:S0001199, Chr VIII from 412408-411386, reverse complement, Verified ORF [10112005cervSGD.fasta]
  • Lin1p [Saccharomyces cerevisiae]gi|626670|pir||S46768 hypothetical protein YHR156c - yeast (Saccharomyces cerevisiae)gi|45269653|gb|AAS56207.1| YHR156C [Saccharomyces cerevisiae]gi|500664|gb|AAB68990.1| Yhr156cp [Saccharomyces cerevisiae]gi|731731|sp| [nrdb_11152004_Chlamydomonas]
  • LIN1 SGDID:S000001199, Chr VIII from 412409-411387, reverse complement, Verified ORF, "Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YHR156C [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication; Lin1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Yhr156cp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Protein LIN1 [nr-271106-contam.fasta]
  • LIN1 SGDID:S000001199, Chr VIII from 412409-411387, reverse complement, Verified ORF, "Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
  • Protein LIN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LIN1 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • LIN1 SGDID:S000001199, Chr VIII from 412406-411384, Genome Release 64-1-1, reverse complement, Verified ORF, "Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication" [yeast-030211-contam.fasta]
  • LIN1 SGDID:S000001199, Chr VIII from 412406-411384, Genome Release 64-2-1, reverse complement, Verified ORF, "Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication" [20141208_orf_trans.fasta]
  • YHR156C SGDID:S000001199, Chr VIII from 412406-411384, Genome Release 64-1-1, reverse complement, Verified ORF, "Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 340 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    U5 snRNP [IPILink to PubMed article]
    chromatin [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYTQYPNSS KLKRNSDRRE HDEKLSDELH NQSTIYEDEE LSRAEYDSDS DSSVEDSTDN  60
   61 ENSGKEMDEK SYEKNEDHVE DHRKRKKSKI QLLDIAEFKK ENLADLDYQI GNSESKVEKG 120
  121 VNIEPFNIDD EIKHGVFDKD GNYIKTENAT ENDQQDNEEW MNDVINTEEV NRLEKEQSVK 180
  181 TQNSRHYMVH EALNLLKFFL VDENETVLES LGRLNKLRKI AISKKNKSLK YVIHGIELLS 240
  241 DLINILEKKG FSEVYEYNRL KVQDAIEEEI FDDSSRIVNH KTKLWGFKWL NKLDEYHGLY 300
  301 TNYEMSYWQK SYFKNSVIVK FHSEPDRDEN WIHVSCLSFM

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) AAR2 LIN1 LSM2 PRP3 PRP8 SNU66
    View Details (MIPS) Mewes HW, et al. (2004) CIK1 CIN8 COG7 KAR3 KIP1 KIP2 KIP3 LIN1
    View Details Krogan NJ, et al. (2006) LIN1 YOR238W
    View Details Gavin AC, et al. (2006) AAR2 BUD31 LIN1
    View Details Gavin AC, et al. (2002) AAR2 BRR1 BUD31 CDC33 CEF1 CLF1 CSN12 CUS1 CWC2 CWC22 CWC23 DHH1 DIB1 ECM2 GCN2 HSH155 HTA1 IMG1 LEA1 LIN1 LSM1 LSM2 LSM4 LSM5 LSM6 LSM7 LUC7 MRP7 MRPL28 MRPL3 MRPL35 MRPL38 MRPL4 MRPL8 MRPS5 MSL1 MUD1 PAT1 PRP11 PRP18 PRP19 PRP21 PRP24 PRP28 PRP3 PRP31 PRP38 PRP39 PRP4 PRP40 PRP42 PRP43 PRP46 PRP6 PRP8 PRP9 RSE1 RVB2 SLU7 SMB1 SMD1 SMD2 SMD3 SME1 SMX2 SMX3 SNP1 SNT309 SNU114 SNU23 SNU56 SNU66 SNU71 SPP381 SPP382 SRB2 STO1 SYF1 TOS4 UTP21 YML6
    View Details Qiu et al. (2008) KAR3 LIN1

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data LIN1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..280] MSA 3.007962 View MSA. No confident structure predictions are available.
    2 View Details [281..340] PSI-BLAST 13.69897 GYF domain from cd2bp2 protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.49601879307777 bayes_pls_golite062009
  • protein binding
    		•  0.396582780419184 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle