YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CCM1

General Information:
Name(s) found: CCM1 / YGR150C [SGD]
Description(s) found:
SHOW ONLY BEST
  • gi|6321589|ref|NP_011666.1| Protein of unknown function, contains PPR motifs; mutant has growth defects on both non-fermentable carbon sources and rich medium; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughpu [NCBI NR]
  • pir||S60441 hypothetical protein YGR150c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1351822|sp|P48237.1|YG3M_YEAST RecName: Full=Pentatricopeptide repeat-containing protein YGR150C [NCBI NR]
  • gi|1323254|emb|CAA97164.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1045256|emb|CAA59808.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • Pentatricopeptide repeat-containing protein YGR150C OS=Saccharomyces cerevisiae GN=YGR150C PE=1 SV=1 [Swiss-Prot]
  • Protein of unknown function localised to mitochondria [mips]
  • Mitochondrial 15s rRNA-binding protein; required for intron removal of COB and COX1 pre-mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma membrane electron transport [SGD]
  • YGR150C, Chr VII from 790454-793048, reverse complement [yeast_orfs2]
  • Chr VII from 790454-793048, reverse complement [yeastorf3.fasta]
  • Chr VII from 790461-793055, reverse complement [yeastorf4.fasta]
  • Chr VII from 793055-790461, reverse complement [yeastorf5.fasta]
  • (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR1 intergenic region [4932.FASTACCERV.txt]
  • YGR150C SGDID:S0003382, Chr VII from 793056-790462, reverse complement, Uncharacterized ORF [yeastflysequest.fasta]
  • YGR150C SGDID:S0003382, Chr VII from 793058-790464, reverse complement, Uncharacterized ORF [10112005cervSGD.fasta]
  • Ygr150cp [Saccharomyces cerevisiae]gi|1323254|emb|CAA97164.1| unnamed protein product [Saccharomyces cerevisiae]gi|1045256|emb|CAA59808.1| unnamed protein product [Saccharomyces cerevisiae]gi|2131684|pir||S60441 hypothetical protein YGR150c - yeast (Sa [nrdb_11152004_Chlamydomonas]
  • YGR150C SGDID:S000003382, Chr VII from 793058-790464, reverse complement, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YGR150C SGDID:S000003382, Chr VII from 793058-790464, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; deletion mutant has growth defects on both non-fermentable carbon sources and rich medium; green fluorescent protein (GFP [yeast-contam.fasta]
  • YGR150C SGDID:S000003382, Chr VII from 793058-790464, reverse complement, Verified ORF, "Protein of unknown function, contains PPR motifs; mutant has growth defects on both non-fermentable carbon sources and rich medium; the authentic, non-tagged protein [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • YGR150C SGDID:S000003382, Chr VII from 793058-790464, reverse complement, Verified ORF, "Protein of unknown function containing pentatricopeptide repeat (PPR) motif; mutant is respiratory deficient and has defective plasma membrane electron transport; aut [yeast-200209-contam.fasta]
  • Uncharacterized protein YGR150C [nr-271106-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Putative protein of unknown function; deletion mutant has growth defects on both non-fermentable carbon sources and rich medium; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; contains PPR motifs; Ygr150cp [Saccharomyces ce [nr-271106-contam.fasta]
  • CCM1 SGDID:S000003382, Chr VII from 793058-790464, reverse complement, Verified ORF, "Protein required for intron removal of COB and COX1 pre-mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma m [SGD_S-cerevisiae_na_01-05-2010_reversed.fasta]
  • YGR150C SGDID:S000003382, Chr VII from 793058-790464, reverse complement, Verified ORF, "Protein of unknown function containing pentatricopeptide repeat (PPR) motif; mutant is respiratory deficient and has defective plasma membrane electron transport; authentic non-tagged protein is detected in highly purified mitochondria" [yeast-bovrabprots.fasta]
  • YGR150C SGDID:S000003382, Chr VII from 793058-790464, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; deletion mutant has growth defects on both non-fermentable carbon sources and rich medium; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; contains PPR motifs" [yeast-contam_custom.fasta]
  • [chemostatdb.fasta]
  • CCM1 SGDID:S000003382, Chr VII from 793058-790464, reverse complement, Verified ORF, "Protein required for intron removal of COB and COX1 pre-mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma membrane electron transport" [SGDyeast.20101221.fasta]
  • CCM1 SGDID:S000003382, Chr VII from 793053-790459, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial 15s rRNA-binding protein; required for intron removal of COB and COX1 pre-mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma membrane electron transport" [yeast-030211-contam.fasta]
  • CCM1 SGDID:S000003382, Chr VII from 793053-790459, Genome Release 64-2-1, reverse complement, Verified ORF, "Mitochondrial 15S rRNA-binding protein; required for intron removal of COB and COX1 pre-mRNAs; has separable roles in stabilizing mitochondrial 15S rRNA and in maturation of the COB and COX1 mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma membrane electron transport" [20141208_orf_trans.fasta]
  • YGR150C SGDID:S000003382, Chr VII from 793053-790459, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial 15s rRNA-binding protein; required for intron removal of COB and COX1 pre-mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma membrane electron transport" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 864 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed articleLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYMARCGPKN NVLCFPFQLS FLFSKRLINK RFKYTLQTED EKNMMGSLSK NKIITPEDVE  60
   61 FKLAQLREFS NTLKERIHNT KSVNSDGHQS NSIAPISEDS RNVNVTKTSS VPNEEKSKNL 120
  121 SDLIHSSFLE KMDHLVPKVI RERVADDDIL AKNLFDRSHS NWAPVIDRLY VSEKRFMDID 180
  181 SREFSVWLNG TVKYLPFHSI LHLDEMLLEQ INGDVVKFNT HMYECIFNNL GNLKPTNFNQ 240
  241 DGTNDKVILK MKELLERYDK ALKITEERIN KKEGFPSKVP KMTQAILNNC LKYSTKCSSF 300
  301 HDMDYFITKF RDDYGITPNK QNLTTVIQFY SRKEMTKQAW NTFDTMKFLS TKHFPDICTY 360
  361 NTMLRICEKE RNFPKALDLF QEIQDHNIKP TTNTYIMMAR VLASSSSNAV VSEGKSDSLR 420
  421 LLGWKYLHEL EDKNLYRHKK DDLNLFLAMM ALAAFDGDIE LSRALYYLFI AKKYKTLCAN 480
  481 WKGNILVDQD TIWKSTLMPE MLNYLMLAYA RFDPRNLPVL SGYEKGIELR RKFLREFDSS 540
  541 MRLDDTDKLV KFKLPFLPIS DLNSEAQVLA ESNAIWSFNM ENGGTRNTLT SSNEAALEDI 600
  601 KKYRQLLDSF AQEAEDFNEF KFKVMYEVTK MQRESINVNV FNKISLHTYL SIPINLKQQK 660
  661 EFLRRLTFFT FQQHEFEAVI KRLYEGYRNI PSSHTRDQNS ISTEAISVSK PETTEDLNLI 720
  721 MHDIWYITCL RHKIMMDTTL YELVMKAAIE FQNEDLAKKV WNDRGKFRTT VPFLKMDQRI 780
  781 RIAKDQKFAH LMVEFFTKQG KYSDAIAIIL SSKNRFNWTY SMVRNLHKAL EEIEDRNSVE 840
  841 ILLDVVNKKS HAKALKWEEQ ELNM

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) CCM1 MRP17
    View Details Gavin AC, et al. (2002) BEM2 CCM1 ECM16 EHD3 FYV4 GEP3 HSC82 MRP1 MRP10 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS5 MRPS8 MRPS9 NAM9 PAP2 PET123 PSD2 PUS7 RIX1 RSM10 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 TIF4631 UBP10 UTP20 UTP22
    View Details Ho Y, et al. (2002) CBF5 CBP2 CCM1 CDC33 CIC1 DBP7 ENP2 GBP2 HAS1 HMO1 HTB2 IMD1 IMD3 ISA1 KRE33 KRI1 MGM101 MSS116 NOC2 NOP12 NOP6 NPL3 PET127 POL5 PRP43 PUF6 PWP1 RLI1 RRP12 RRP5 TIF4631 TRA1 TSR1 URB1 URB2 UTP10 UTP20 YPP1 YRA1 YTM1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data CCM1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] ORFEUS 14.38 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    2 View Details [197..387] ORFEUS 12.12 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    3 View Details [388..461] ORFEUS 12.12 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    4 View Details [462..625] ORFEUS 12.12 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    5 View Details [626..864] ORFEUS 12.12 Constant regulatory domain of protein phosphatase 2a, pr65alpha

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.840666269162483 bayes_pls_golite062009
  • protein binding
    		•  0.305336743191506 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle