| Protein: | CCM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 864 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCM1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [7..858] | [122..1002] |
|
|
0.0 | [3..681] | [50..732] |
|
Region A: Residues: [1-196] |
1 11 21 31 41 51
| | | | | |
1 MYMARCGPKN NVLCFPFQLS FLFSKRLINK RFKYTLQTED EKNMMGSLSK NKIITPEDVE 60
61 FKLAQLREFS NTLKERIHNT KSVNSDGHQS NSIAPISEDS RNVNVTKTSS VPNEEKSKNL 120
121 SDLIHSSFLE KMDHLVPKVI RERVADDDIL AKNLFDRSHS NWAPVIDRLY VSEKRFMDID 180
181 SREFSVWLNG TVKYLP
|
| Detection Method: |  |
| Confidence: | 14.38 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.840666269162483 | bayes_pls_golite062009 |
| protein binding | 0.305336743191506 | bayes_pls_golite062009 |
|
Region A: Residues: [197-387] |
1 11 21 31 41 51
| | | | | |
1 FHSILHLDEM LLEQINGDVV KFNTHMYECI FNNLGNLKPT NFNQDGTNDK VILKMKELLE 60
61 RYDKALKITE ERINKKEGFP SKVPKMTQAI LNNCLKYSTK CSSFHDMDYF ITKFRDDYGI 120
121 TPNKQNLTTV IQFYSRKEMT KQAWNTFDTM KFLSTKHFPD ICTYNTMLRI CEKERNFPKA 180
181 LDLFQEIQDH N
|
| Detection Method: | |
| Confidence: | 12.12 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [388-461] |
1 11 21 31 41 51
| | | | | |
1 IKPTTNTYIM MARVLASSSS NAVVSEGKSD SLRLLGWKYL HELEDKNLYR HKKDDLNLFL 60
61 AMMALAAFDG DIEL
|
| Detection Method: | |
| Confidence: | 12.12 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [462-625] |
1 11 21 31 41 51
| | | | | |
1 SRALYYLFIA KKYKTLCANW KGNILVDQDT IWKSTLMPEM LNYLMLAYAR FDPRNLPVLS 60
61 GYEKGIELRR KFLREFDSSM RLDDTDKLVK FKLPFLPISD LNSEAQVLAE SNAIWSFNME 120
121 NGGTRNTLTS SNEAALEDIK KYRQLLDSFA QEAEDFNEFK FKVM
|
| Detection Method: | |
| Confidence: | 12.12 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [626-864] |
1 11 21 31 41 51
| | | | | |
1 YEVTKMQRES INVNVFNKIS LHTYLSIPIN LKQQKEFLRR LTFFTFQQHE FEAVIKRLYE 60
61 GYRNIPSSHT RDQNSISTEA ISVSKPETTE DLNLIMHDIW YITCLRHKIM MDTTLYELVM 120
121 KAAIEFQNED LAKKVWNDRG KFRTTVPFLK MDQRIRIAKD QKFAHLMVEF FTKQGKYSDA 180
181 IAIILSSKNR FNWTYSMVRN LHKALEEIED RNSVEILLDV VNKKSHAKAL KWEEQELNM
|
| Detection Method: | |
| Confidence: | 12.12 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
