Protein Overview: YGR017W

General Information:
Name(s) found:	YGR017W [SGD]
Description(s) found: SHOW ONLY BEST	gi\|6321454\|ref\|NP_011531.1\| Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the cytoplasm; Ygr017wp [Saccharomyces cerevisiae] [NCBI NR] pir\|\|S64308 hypothetical protein YGR017w - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|1723648\|sp\|P53210.1\|YG1B_YEAST RecName: Full=Uncharacterized protein YGR017W [NCBI NR] gi\|1322984\|emb\|CAA97000.1\| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR] Uncharacterized protein YGR017W OS=Saccharomyces cerevisiae GN=YGR017W PE=1 SV=1 [Swiss-Prot] Protein of unknown function localised to cytoplasm and nucleus [mips] Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the cytoplasm [SGD] YGR017W, Chr VII from 523781-524674 [yeast_orfs2] Chr VII from 523781-524674 [yeastorf3.fasta] Chr VII from 523788-524681 [yeastorf4.fasta] (P53210) Hypothetical 34.7 kDa protein in MSB2-UGA1 intergenic region [4932.FASTACCERV.txt] YGR017W SGDID:S0003249, Chr VII from 523789-524682, Uncharacterized ORF [yeastflysequest.fasta] YGR017W SGDID:S0003249, Chr VII from 523791-524684, Uncharacterized ORF [10112005cervSGD.fasta] Ygr017wp [Saccharomyces cerevisiae]gi\|1322984\|emb\|CAA97000.1\| unnamed protein product [Saccharomyces cerevisiae]gi\|2131644\|pir\|\|S64308 hypothetical protein YGR017w - yeast (Saccharomyces cerevisiae)gi\|1723648\|sp\|P53210\|YG1B_YEAST Hypothetical 34.7 kDa [nrdb_11152004_Chlamydomonas] YGR017W SGDID:S000003249, Chr VII from 523791-524684, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] YGR017W SGDID:S000003249, Chr VII from 523791-524684, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the cytoplasm" [yeast-contam.fasta] Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the cytoplasm; Ygr017wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta] unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Uncharacterized protein YGR017W [nr-271106-contam.fasta] [chemostatdb.fasta] Uncharacterized protein YGR017W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR017W PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YGR017W SGDID:S000003249, Chr VII from 523787-524680, Genome Release 64-1-1, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the cytoplasm" [yeast-030211-contam.fasta] YGR017W SGDID:S000003249, Chr VII from 523787-524680, Genome Release 64-2-1, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the cytoplasm" [20141208_orf_trans.fasta] TR7189\|c0_g1_i1\|g.5025 ORF TR7189\|c0_g1_i1\|g.5025 TR7189\|c0_g1_i1\|m.5025 type:complete len:298 (+) TR7189\|c0_g1_i1:1765-2658(+) [Y12_S_cerevisiae-Sep2015-contam.fasta] TR5951\|c0_g1_i1\|g.4221 ORF TR5951\|c0_g1_i1\|g.4221 TR5951\|c0_g1_i1\|m.4221 type:complete len:298 (+) TR5951\|c0_g1_i1:164-1057(+) [DBVPG6044_S_cerevisiae-Sep2015-contam.fasta] asmbl_1402\|g.1375 ORF asmbl_1402\|g.1375 asmbl_1402\|m.1375 type:complete len:298 (+) asmbl_1402:368-1261(+) [DBVPG6044_Trinity_v2_2_0_PASA_6May2016-contam.fasta] asmbl_1456\|g.973 ORF asmbl_1456\|g.973 asmbl_1456\|m.973 type:complete len:298 (+) asmbl_1456:1784-2677(+) [Y12_Trinity_v2_2_0_PASA_6May2016-contam.fasta] ID=asmbl_1407\|g.1078 ORF ID=asmbl_1407\|g.1078 ID=asmbl_1407\|m.1078 type:complete len:298 (+) ID=asmbl_1407:368-1261(+) [DBVPG6044_quiverGenomes_Trinity_v2_2_0_PASA_2June2016-contam.fasta] ID=asmbl_1466\|g.1058 ORF ID=asmbl_1466\|g.1058 ID=asmbl_1466\|m.1058 type:complete len:298 (+) ID=asmbl_1466:1786-2679(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
Organism:	Saccharomyces cerevisiae
Length:	297 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] cytoplasm [IDA]
Biological Process:	biological_process [ND]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHQMAPWIP MFIQSCKNNT EPFVSFQFAT VDELTNKPRC RTVVFRDFLF HDKRTNVLTF  60
   61 NTDMRSSKIT ESFITPNSNN SSDSKRCETP FFEACFYFPE TWEQYRFSGQ CFTISKQFKK 120
  121 IPAEIVTKYD IFSPRFSETN DDSTDEEIDT PINDDDDDDK NNDADNNDIN EDNKLIESIE 180
  181 NDEHHEDEDD YYPQPQEWEA ELLRQWSSLS RHTKSLYRKP APGQKLTSET SKQLDKLHRG 240
  241 VDGAKEDAGL ENFGIVCLCV DSVDFLNLKE GRGGERWIFQ KTDGKDEDLW EEQEVCP

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Riffle et al. (2010) (Unpublished Data)		VIP1 YGR017W
View Details	Gavin AC, et al. (2006)		VIP1 YGR017W
View Details	Ho Y, et al. (2002)		CDC28 CEG1 CKA1 CKA2 CKB1 CKB2 FKH1 FYV8 GCD2 GCD7 GCN3 HHF1, HHF2 HTB1 MBP1 MGM101 MPH1 NET1 NOP1 RRP1 SEC2 SIN3 SUI2 SUI3 UBP12 URE2 YGR017W YMR144W

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	CEP3	sample cbf3 from feb 2005	Sandall S, et all (2006)
View Run	RPA135	No Comments	Schneider, DA, et al. (2006)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	SWC4	YGR017W	1	Hazbun TR, et al. (2003)
View Screen	UBC7	YGR017W	1	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	YGR017W	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..152]	ORFEUS	13.85	Pyridoxine 5'-phoshate oxidase (PNP oxidase)
2	View Details	[153..297]	deduced	N/A	No confident structure predictions are available.

Functions predicted (by domain):

Gene Ontology predictions

No functions predicted.

Term	Confidence	Notes
transcription regulator activity	2.32760581622259	bayes_pls_golite062009
binding	2.16870325397306	bayes_pls_golite062009
catalytic activity	0.636519364005912	bayes_pls_golite062009
transcription factor binding	0.397617773348741	bayes_pls_golite062009
protein binding	0.0480378028458218	bayes_pls_golite062009

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2