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Protein Overview: YDR341C

General Information:
Name(s) found: YDR341C [SGD]
Description(s) found:
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  • gi|6320548|ref|NP_010628.1| Arginyl-tRNA synthetase, proposed to be cytoplasmic but the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; Ydr341cp [Saccharomyces cerevisiae] [NCBI NR]
  • gi|5821887|pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase [NCBI NR]
  • gi|2501051|sp|Q05506.1|SYRC_YEAST RecName: Full=Arginyl-tRNA synthetase, cytoplasmic; AltName: Full=Arginine--tRNA ligase; Short=ArgRS [NCBI NR]
  • pir||S70106 probable arginine-tRNA ligase (EC 6.1.1.19) - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|14719544|pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase Complexed With The Trnaarg [NCBI NR]
  • gi|14719542|pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed With The Trna(Arg) And L-Arg [NCBI NR]
  • gi|1230668|gb|AAB64777.1| Ydr341cp [Saccharomyces cerevisiae] [NCBI NR]
  • Arginyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=YDR341C PE=1 SV=1 [Swiss-Prot]
  • Arginyl-tRNA synthetase, cytosolic [mips]
  • Arginyl-tRNA synthetase, proposed to be cytoplasmic but the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies [SGD]
  • YDR341C, Chr IV from 1151793-1153616, reverse complement [yeast_orfs2]
  • Chr IV from 1151793-1153616, reverse complement [yeastorf3.fasta]
  • Chr IV from 1151792-1153615, reverse complement [yeastorf4.fasta]
  • Chr IV from 1153615-1151792, reverse complement [yeastorf5.fasta]
  • (Q05506) Arginyl-tRNA synthetase, cytoplasmic (EC 6.1.1.19) (Arginine--tRNA ligase) (ArgRS) [4932.FASTACCERV.txt]
  • YDR341C SGDID:S0002749, Chr IV from 1153616-1151793, reverse complement, Verified ORF [yeastflysequest.fasta]
  • YDR341C SGDID:S0002749, Chr IV from 1153618-1151795, reverse complement, Verified ORF [10112005cervSGD.fasta]
  • Cytoplasmic arginyl-tRNA synthetase [Saccharomyces cerevisiae]gi|1230668|gb|AAB64777.1| Ydr341cp [Saccharomyces cerevisiae]gi|2132403|pir||S70106 probable arginine-tRNA ligase (EC 6.1.1.19) - yeast (Saccharomyces cerevisiae)gi|2501051|sp|Q05506|SYRC_Y [nrdb_11152004_Chlamydomonas]
  • YDR341C SGDID:S000002749, Chr IV from 1153618-1151795, reverse complement, Verified ORF, "Cytoplasmic arginyl-tRNA synthetase" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YDR341C SGDID:S000002749, Chr IV from 1153620-1151797, reverse complement, Verified ORF, "Cytoplasmic arginyl-tRNA synthetase" [yeast-contam.fasta]
  • YDR341C SGDID:S000002749, Chr IV from 1153621-1151798, reverse complement, Verified ORF, "Arginyl-tRNA synthetase, proposed to be cytoplasmic but the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • Cytoplasmic arginyl-tRNA synthetase; Ydr341cp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed With The Trna(Arg) And L-Arg [nr-271106-contam.fasta]
  • Arginyl-tRNA synthetase, cytoplasmic (Arginine--tRNA ligase) (ArgRS) [nr-271106-contam.fasta]
  • Ydr341cp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase Complexed With The Trnaarg [nr-271106-contam.fasta]
  • Chain A, Yeast Arginyl-Trna Synthetase [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Arginine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR341C PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YDR341C SGDID:S000002749, Chr IV from 1153626-1151803, Genome Release 64-1-1, reverse complement, Verified ORF, "Arginyl-tRNA synthetase, proposed to be cytoplasmic but the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies" [yeast-030211-contam.fasta]
  • YDR341C SGDID:S000002749, Chr IV from 1153626-1151803, Genome Release 64-2-1, reverse complement, Verified ORF, "Arginyl-tRNA synthetase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDR341C has a paralog, MSR1, that arose from the whole genome duplication" [20141208_orf_trans.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 607 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [NASLink to PubMed article]
    mitochondrion [IDALink to PubMed articleLink to PubMed article]
    Biological Process: arginyl-tRNA aminoacylation [IDALink to PubMed article]
    translation [ICLink to PubMed article]
    Molecular Function: arginine-tRNA ligase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTANMISQ LKKLSIAEPA VAKDSHPDVN IVDLMRNYIS QELSKISGVD SSLIFPALEW  60
   61 TNTMERGDLL IPIPRLRIKG ANPKDLAVQW AEKFPCGDFL EKVEANGPFI QFFFNPQFLA 120
  121 KLVIPDILTR KEDYGSCKLV ENKKVIIEFS SPNIAKPFHA GHLRSTIIGG FLANLYEKLG 180
  181 WEVIRMNYLG DWGKQFGLLA VGFERYGNEE ALVKDPIHHL FDVYVRINKD IEEEGDSIPL 240
  241 EQSTNGKARE YFKRMEDGDE EALKIWKRFR EFSIEKYIDT YARLNIKYDV YSGESQVSKE 300
  301 SMLKAIDLFK EKGLTHEDKG AVLIDLTKFN KKLGKAIVQK SDGTTLYLTR DVGAAMDRYE 360
  361 KYHFDKMIYV IASQQDLHAA QFFEILKQMG FEWAKDLQHV NFGMVQGMST RKGTVVFLDN 420
  421 ILEETKEKMH EVMKKNENKY AQIEHPEEVA DLVGISAVMI QDMQGKRINN YEFKWERMLS 480
  481 FEGDTGPYLQ YAHSRLRSVE RNASGITQEK WINADFSLLK EPAAKLLIRL LGQYPDVLRN 540
  541 AIKTHEPTTV VTYLFKLTHQ VSSCYDVLWV AGQTEELATA RLALYGAARQ VLYNGMRLLG 600
  601 LTPVERM

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Gavin AC, et al. (2006) ADE3 CSE1 DPS1 FUR1 SAR1 TDH1 TOM1 YDR341C YNK1
    View Details Ho Y, et al. (2002) ADE3 ALA1 BUD13 CAR2 CPR1 DED81 FPR1 HOM3 IST3 MLP2 PFK2 PGM2 SAH1 SSZ1 THS1 URA1 YDR341C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] PSI-BLAST 10178.0 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
    2 View Details [116..136]
    [415..607]    		 PSI-BLAST 10178.0 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
    3 View Details [137..191]
    [272..414]    		 PSI-BLAST 10178.0 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
    4 View Details [192..271] PSI-BLAST 10178.0 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  5.72854650987135 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  3.76808520367507 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • binding
    		•  0.485102284225571 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.449504767632354 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle