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Protein Overview: SWC5

General Information:
Name(s) found: SWC5 / YBR231C [SGD]
Description(s) found:
Found 29 descriptions.
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  • Protein of unknown function, component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 303 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Swr1 complex [IDALink to PubMed articleLink to PubMed article]
    Biological Process: chromatin remodeling [IDALink to PubMed article][IGILink to PubMed article][IPILink to PubMed article]
    histone exchange [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEVETKIIP NEKEDEDEDG YIEEEDEDFQ PEKDKLGGGS DDSDASDGGD DYDDGVNRDK  60
   61 GRNKVDYSRI ESESGGLIKT RRARQAEEEY AKTHKYESLT VESIPAKVNS IWEELQEASK 120
  121 NRLLSSSGKV GSVLDGSKEA RSTTAAQQED KILIERNYKF AGETVHEKKW VSRSSAEGQE 180
  181 YLNSLKFKQQ APAAPVQLEK AVRTKSNESR QHLRRPLKRP PLLEQIISGG LRPKLTTLEK 240
  241 SQLDWASYVD RAGLNDELVL HNKDGFLARQ EFLQRVGSAE DERYKELRRQ QLAQQLQQDS 300
  301 EAS

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) ARP4 ARP6 BDF1 RVB1 RVB2 SWC3 SWC4 SWC5 SWC7 SWR1 VPS71 VPS72 YAF9
    View Details Krogan NJ, et al. (2006) ARP4 ARP5 ARP6 ARP8 CCA1 EAF1 EAF5 EAF6 EAF7 EPL1 ESA1 IES1 IES2 IES3 IES4 IES5 IES6 INO80 NHP10 NTO1 PIH1 RVB1 RVB2 SAS3 SWC3 SWC4 SWC5 SWC7 SWR1 TAH1 TRA1 VPS71 VPS72 YAF9 YNG2
    View Details Qiu et al. (2008) SWC5 VPS71 YAF9

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run SWC4 No Comments Hazbun TR, et al. (2003)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data SWC5 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..303] MSA 4.012983 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle