YRC Public Data Repository - Protein Structure Prediction

Protein:	SWC5
Organism:	Saccharomyces cerevisiae
Length:	303 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWC5.

Description	E-value	Query Range	Subject Range
gi\|151946617 - gi\|151946617\|gb\|EDN64839.1\| swr complex subunit [Saccharomyces cerevisiae YJM789] SWC5_YEAST - SWR1-complex protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWC5 PE=1 SV=1 SWC5 - Protein of unknown function, component of the SWR1 complex, which exchanges histone variant H2AZ (Ht...	6.0E-74	[1..303]	[1..303]
gi\|3115274 - gi\|3115274\|emb\|CAA69396.1\| cp27 [Mus musculus]	2.0E-57	[12..292]	[24..293]
gi\|2114205 - gi\|2114205\|dbj\|BAA20070.1\| bucentaur [Homo sapiens]	2.0E-57	[13..292]	[3..275]
gi\|220949070, gi... - gi\|220958156\|gb\|ACL91621.1\| Yeti-PA [synthetic construct], gi\|220949070\|gb\|ACL87078.1\| Yeti-PA [synt... Yeti-PA, FBpp0311087 - The gene Yeti is referred to in FlyBase by the symbol Dmel\Yeti (CG40218, FBgn0043842). It is a prot...	6.0E-47	[26..291]	[32..238]
gi\|1870230 - gi\|1870230\|gb\|AAB48683.1\| ORF [Emericella nidulans]	9.0E-46	[69..289]	[14..259]

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Predicted Domain #1

Region A:
Residues: [1-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEVETKIIP NEKEDEDEDG YIEEEDEDFQ PEKDKLGGGS DDSDASDGGD DYDDGVNRDK  60
   61 GRNKVDYSRI ESESGGLIKT RRARQAEEEY AKTHKYESLT VESIPAKVNS IWEELQEASK 120
  121 NRLLSSSGKV GSVLDGSKEA RSTTAAQQED KILIERNYKF AGETVHEKKW VSRSSAEGQE 180
  181 YLNSLKFKQQ APAAPVQLEK AVRTKSNESR QHLRRPLKRP PLLEQIISGG LRPKLTTLEK 240
  241 SQLDWASYVD RAGLNDELVL HNKDGFLARQ EFLQRVGSAE DERYKELRRQ QLAQQLQQDS 300
  301 EAS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits