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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 22 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
BRX1
  • nucleolus
  • ribosome biogenesis
  • ribosomal large subunit assembly
  • 5S rRNA binding
  • rRNA primary transcript binding
  • CIC1
  • proteasome complex
  • nucleolus
  • protein catabolic process
  • ribosomal large subunit biogenesis
  • ribosome biogenesis
  • protein binding, bridging
  • DBP10
  • nuclear outer membrane
  • nucleolus
  • ribosome biogenesis
  • ribosomal large subunit assembly
  • ATP-dependent RNA helicase activity
  • DRS1
  • nuclear outer membrane
  • nucleolus
  • ribosome biogenesis
  • ribosomal large subunit assembly
  • ATP-dependent RNA helicase activity
  • ERB1
  • nucleus
  • nucleolus
  • rRNA processing
  • molecular_function
  • HAS1
  • nuclear envelope
  • nucleolus
  • ribosome biogenesis
  • rRNA processing
  • RNA binding
  • RNA-dependent ATPase activity
  • ATP-dependent RNA helicase activity
  • NIP7
  • nucleolus
  • ribosomal large subunit biogenesis
  • ribosome biogenesis
  • rRNA processing
  • ribosomal large subunit assembly
  • molecular_function
  • NOC2
  • nucleus
  • Noc2p-Noc3p complex
  • mitochondrion
  • Noc1p-Noc2p complex
  • ribosomal subunit export from nucleus
  • ribosome biogenesis
  • ribosome assembly
  • molecular_function
  • NOC3
  • nucleus
  • Noc2p-Noc3p complex
  • nucleolus
  • DNA replication initiation
  • ribosome biogenesis
  • rRNA processing
  • protein binding
  • chromatin binding
  • NOG1
  • nuclear outer membrane
  • nucleolus
  • preribosome, large subunit precursor
  • ribosomal subunit export from nucleus
  • ribosomal large subunit biogenesis
  • ribosome biogenesis
  • GTP binding
  • NOP15
  • nucleus
  • nucleolus
  • cytokinesis, actomyosin contractile ring assembly
  • ribosomal large subunit biogenesis
  • ribosome biogenesis
  • ribosome assembly
  • molecular_function
  • NOP2
  • nucleolus
  • ribosome biogenesis
  • rRNA processing
  • RNA methyltransferase activity
  • S-adenosylmethionine-dependent methyltransferase activity
  • NOP7
  • nucleus
  • nucleolus
  • cell proliferation
  • maturation of SSU-rRNA
  • ribosomal large subunit biogenesis
  • ribosome biogenesis
  • cell cycle
  • molecular_function
  • NSA1
  • nucleus
  • nucleolus
  • ribosomal large subunit biogenesis
  • ribosome biogenesis
  • molecular_function
  • NUG1
  • nucleus
  • nucleolus
  • ribosome biogenesis
  • rRNA processing
  • GTPase activity
  • PUF6
  • nucleus
  • nucleolus
  • regulation of transcription, mating-type specific
  • ribosome biogenesis
  • mRNA binding
  • specific transcriptional repressor activity
  • RIX1
  • nucleus
  • nuclear outer membrane
  • nucleoplasm
  • ribosomal subunit export from nucleus
  • ribosome biogenesis
  • ribosomal large subunit assembly
  • molecular_function
  • RLP7
  • nucleolus
  • ribosomal large subunit biogenesis
  • ribosome biogenesis
  • processing of 27S pre-rRNA
  • rRNA binding
  • RPF1
  • nucleolus
  • ribosome biogenesis
  • ribosomal large subunit assembly
  • processing of 27S pre-rRNA
  • rRNA primary transcript binding
  • RPL25
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • ribosomal large subunit assembly
  • translation
  • RNA binding
  • structural constituent of ribosome
  • SPB4
  • nuclear outer membrane
  • nucleolus
  • ribosome biogenesis
  • ribosomal large subunit assembly
  • ATP-dependent RNA helicase activity
  • YTM1
  • nucleus
  • nucleolus
  • ribosomal large subunit biogenesis
  • ribosome biogenesis
  • molecular_function
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    nucleolus 2.8664E-28 22 211 20 6292
    nuclear lumen 1.338E-23 22 453 21 6292
    organelle lumen 4.0618E-20 22 660 21 6292
    intracellular organelle lumen 4.0618E-20 22 660 21 6292
    membrane-enclosed lumen 1.4141E-19 22 700 21 6292
    non-membrane-bounded organelle 1.0911E-16 22 959 21 6292
    intracellular non-membrane-bounded organelle 1.0911E-16 22 959 21 6292
    nuclear part 2.0658E-15 22 1103 21 6292
    intracellular organelle part 1.9119E-10 22 2282 22 6292
    organelle part 1.9119E-10 22 2282 22 6292
    nucleus 7.6678E-10 22 2041 21 6292
    preribosome, large subunit precursor 3.0753E-6 22 9 3 6292
    nuclear outer membrane 9.3062E-6 22 86 5 6292
    Noc2p-Noc3p complex 1.1672E-5 22 2 2 6292
    nuclear membrane 1.6796E-5 22 97 5 6292
    nuclear envelope 4.5341E-5 22 199 6 6292
    intracellular organelle 6.7452E-5 22 4070 22 6292
    organelle 6.7819E-5 22 4071 22 6292
    Noc complex 1.1598E-4 22 5 2 6292
    membrane-bounded organelle 1.9787E-4 22 3771 21 6292
    intracellular membrane-bounded organelle 1.9787E-4 22 3771 21 6292
    preribosome 2.07E-4 22 34 3 6292
    outer membrane 3.0497E-4 22 178 5 6292
    organelle outer membrane 3.0497E-4 22 178 5 6292
    nuclear membrane-endoplasmic reticulum network 1.0274E-3 22 232 5 6292
    endomembrane system 1.9297E-3 22 398 6 6292
    intracellular part 4.7906E-3 22 4938 22 6292
    intracellular 5.6476E-3 22 4975 22 6292
    envelope 6.3667E-3 22 505 6 6292
    organelle envelope 6.3667E-3 22 505 6 6292
    Noc1p-Noc2p complex 6.9813E-3 22 2 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    ribosome biogenesis 1.0142E-28 22 346 22 6292
    ribonucleoprotein complex biogenesis 5.9191E-28 22 374 22 6292
    ribosomal large subunit biogenesis 4.6528E-26 22 65 15 6292
    cellular component biogenesis 6.4039E-22 22 694 22 6292
    ribosome assembly 3.3503E-15 22 64 10 6292
    organelle assembly 7.4553E-15 22 69 10 6292
    ribonucleoprotein complex assembly 1.5184E-13 22 92 10 6292
    ribosomal large subunit assembly 4.7178E-13 22 41 8 6292
    ribosomal subunit assembly 5.8466E-12 22 55 8 6292
    cellular macromolecular complex assembly 1.5346E-10 22 182 10 6292
    cellular macromolecular complex subunit organization 4.9138E-9 22 259 10 6292
    macromolecular complex assembly 1.0823E-8 22 281 10 6292
    macromolecular complex subunit organization 1.0698E-7 22 357 10 6292
    rRNA processing 1.6187E-7 22 128 7 6292
    cellular component assembly 2.1832E-7 22 385 10 6292
    rRNA metabolic process 2.5841E-7 22 137 7 6292
    ncRNA processing 5.4328E-6 22 215 7 6292
    ncRNA metabolic process 1.7598E-5 22 257 7 6292
    establishment of ribosome localization 9.1587E-5 22 26 3 6292
    ribosome localization 9.1587E-5 22 26 3 6292
    ribosomal subunit export from nucleus 9.1587E-5 22 26 3 6292
    RNA processing 2.1411E-4 22 380 7 6292
    cellular process 4.2871E-4 22 4426 22 6292
    establishment of organelle localization 8.6537E-4 22 55 3 6292
    processing of 27S pre-rRNA 1.3596E-3 22 16 2 6292
    organelle organization 2.617E-3 22 1127 10 6292
    organelle localization 3.044E-3 22 85 3 6292
    nuclear export 5.2329E-3 22 103 3 6292
    nuclear transport 9.9593E-3 22 130 3 6292
    nucleocytoplasmic transport 9.9593E-3 22 130 3 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    ATP-dependent RNA helicase activity 2.1727E-6 22 28 4 6292
    RNA-dependent ATPase activity 2.5146E-6 22 29 4 6292
    RNA helicase activity 1.1502E-5 22 42 4 6292
    ATP-dependent helicase activity 1.9721E-5 22 48 4 6292
    purine NTP-dependent helicase activity 1.9721E-5 22 48 4 6292
    rRNA binding 2.0179E-5 22 16 3 6292
    rRNA primary transcript binding 1.1598E-4 22 5 2 6292
    helicase activity 1.7186E-4 22 83 4 6292
    RNA binding 1.2682E-3 22 367 6 6292
    ATPase activity, coupled 1.5844E-3 22 149 4 6292
    nucleoside-triphosphatase activity 4.7765E-3 22 329 5 6292
    ATPase activity 5.59E-3 22 211 4 6292
    hydrolase activity, acting on acid anhydrides 6.44E-3 22 353 5 6292
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.44E-3 22 353 5 6292
    pyrophosphatase activity 6.44E-3 22 353 5 6292
    5S rRNA binding 6.9813E-3 22 2 1 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle