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Protein Overview: PAT1

General Information:
Name(s) found: PAT1 / YCR077C [SGD]
Description(s) found:
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  • gi|49065668|sp|P25644.3|PAT1_YEAST RecName: Full=DNA topoisomerase 2-associated protein PAT1; AltName: Full=Topoisomerase II-associated protein PAT1 [NCBI NR]
  • gi|14588957|emb|CAC42990.1| topoisomerase II-associated protein [Saccharomyces cerevisiae] [NCBI NR]
  • gi|10383807|ref|NP_010002.2| Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; functionally lin [NCBI NR]
  • DNA topoisomerase 2-associated protein PAT1 OS=Saccharomyces cerevisiae GN=PAT1 PE=1 SV=3 [Swiss-Prot]
  • PAT1 Topoisomerase II-associated protein [mips]
  • Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; functionally linked to Pab1p [SGD]
  • PAT1, Chr III from 250231-252621, reverse complement [yeast_orfs2]
  • Chr III from 250231-252621, reverse complement [yeastorf3.fasta]
  • Chr III from 252621-250231, reverse complement [yeastorf5.fasta]
  • >Q8NKJ3 (Q8NKJ3) Topoisomerase II-associated protein [4932.FASTACCERV.txt]
  • PAT1 SGDID:S0000673, Chr III from 252624-250234, reverse complement, Verified ORF [yeastflysequest.fasta]
  • Pat1p [Saccharomyces cerevisiae]gi|14588957|emb|CAC42990.1| topoisomerase II-associated protein [Saccharomyces cerevisiae]gi|49065668|sp|P25644|PAT1_YEAST Topoisomerase II-associated protein PAT1 [nrdb_11152004_Chlamydomonas]
  • (P25644) Topoisomerase II-associated protein PAT1 [cerv4932.FASTAC]
  • PAT1 SGDID:S000000673, Chr III from 252624-250234, reverse complement, Verified ORF, "Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and p [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • PAT1 SGDID:S000000673, Chr III from 252625-250235, reverse complement, Verified ORF, "Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and p [yeast-contam.fasta]
  • topoisomerase II-associated protein [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; functionally linked to Pab1p; Pat1p [Saccharo [nr-271106-contam.fasta]
  • Topoisomerase II-associated protein PAT1 [nr-271106-contam.fasta]
  • PAT1 SGDID:S000000673, Chr III from 252625-250235, reverse complement, Verified ORF, "Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; functionally linked to Pab1p" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 796 amino acids

    Gene Ontology:
    Cellular Component: cytoplasmic mRNA processing body [IDALink to PubMed article][IMPLink to PubMed article]
    Biological Process: deadenylation-dependent decapping of nuclear-transcribed mRNA [IMPLink to PubMed article][IPILink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    regulation of translational initiation [IGILink to PubMed article][IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFGLENSG NARDGPLDFE ESYKGYGEHE LEENDYLNDE TFGDNVQVGT DFDFGNPHSS  60
   61 GSSGNAIGGN GVGATARSYV AATAEGISGP RTDGTAAAGP LDLKPMESLW STAPPPAMAP 120
  121 SPQSTMAPAP APQQMAPLQP ILSMQDLERQ QRQMQQQFMN FHAMGHPQGL PQGPPQQQFP 180
  181 MQPASGQPGP SQFAPPPPPP GVNVNMNQMP MGPVQVPVQA SPSPIGMSNT PSPGPVVGAT 240
  241 KMPLQSGRRS KRDLSPEEQR RLQIRHAKVE KILKYSGLMT PRDKDFITRY QLSQIVTEDP 300
  301 YNEDFYFQVY KIIQRGGITS ESNKGLIARA YLEHSGHRLG GRYKRTDIAL QRMQSQVEKA 360
  361 VTVAKERPSK LKDQQAAAGN SSQDNKQANT VLGKISSTLN SKNPRRQLQI PRQQPSDPDA 420
  421 LKDVTDSLTN VDLASSGSSS TGSSAAAVAS KQRRRSSYAF NNGNGATNLN KSGGKKFILE 480
  481 LIETVYEEIL DLEANLRNGQ QTDSTAMWEA LHIDDSSYDV NPFISMLSFD KGIKIMPRIF 540
  541 NFLDKQQKLK ILQKIFNELS HLQIIILSSY KTTPKPTLTQ LKKVDLFQMI ILKIIVSFLS 600
  601 NNSNFIEIMG LLLQLIRNNN VSFLTTSKIG LNLITILISR AALIKQDSSR SNILSSPEIS 660
  661 TWNEIYDKLF TSLESKIQLI FPPREYNVHI MRLQNDKFMD EAYIWQFLAS LALSGKLNHQ 720
  721 RIIIDEVRDE IFATINEAET LQKKEKELSV LPQRSQELDT ELKSIIYNKE KLYQDLNLFL 780
  781 NVMGLVYRDG EISELK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) BRR2 DHH1 DIB1 KEM1 LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 PAT1 PRP24 PRP3 PRP31 PRP4 PRP6 PRP8 SMD2 SMD3 SNU114 SNU66
    View Details Krogan NJ, et al. (2006) KEM1 LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 LSM8 PAT1 PRP24 YGR054W
    View Details Gavin AC, et al. (2006) KRS1 LSM1 LSM2 LSM4 LSM5 LSM6 LSM7 PAT1
    View Details Gavin AC, et al. (2002) AAR2 ASC1 BRR1 BUD31 CDC33 CEF1 CLF1 CSN12 CUS1 CWC2 CWC22 CWC23 DCP2 DHH1 DIB1 ECM2 ERB1 GCN2 HSH155 HTA1 IMG1 KRS1 LEA1 LIN1 LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 LUC7 MRP7 MRPL28 MRPL3 MRPL35 MRPL38 MRPL4 MRPL8 MRPS5 MSL1 MUD1 NAM7 NOG2 NOP1 NUG1 PAT1 PRP11 PRP18 PRP19 PRP21 PRP24 PRP28 PRP3 PRP31 PRP38 PRP39 PRP4 PRP40 PRP42 PRP43 PRP46 PRP6 PRP8 PRP9 RSE1 RVB2 SLU7 SMB1 SMD1 SMD2 SMD3 SME1 SMX2 SMX3 SNP1 SNT309 SNU114 SNU23 SNU56 SNU66 SNU71 SPP381 SPP382 SQS1 SRB2 SRO9 STO1 SYF1 TOS4 UTP21 YML6
    View Details Ho Y, et al. (2002) ADE5,7 DCP2 DHH1 GPG1 LSM1 LSM2 LSM4 LSM7 LSM8 PAT1 PEX19 PRP24 RPN6 SEC26 TPS1 UBP15
    View Details Qiu et al. (2008) DCP1 DCP2 DHH1 KEM1 LSM1 PAT1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run NAF1 No Comments Hazbun TR, et al. (2003)
    View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen SPP382 PAT1 2 Hazbun TR, et al. (2003)
    View Screen PSF1 PAT1 2 Hazbun TR, et al. (2003)
    View Screen PCF11 PAT1 2 Unpublished Fields Lab Data
    View Screen PCF11 PAT1 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data PAT1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..227] ab initio 12.04 No description for 1deqA was found.
    2 View Details [228..424] MSA 1.264971 View MSA. No confident structure predictions are available.
    3 View Details [425..796] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle