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Protein Overview: MRP4

General Information:
Name(s) found: MRP4 / YHL004W [SGD]
Description(s) found:
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  • gi|6321782|ref|NP_011859.1| Mitochondrial ribosomal protein of the small subunit; Mrp4p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|500819|gb|AAB68428.1| Mrp4p: Mitochondrial ribosomal protein [Saccharomyces cerevisiae] [NCBI NR]
  • gi|45270660|gb|AAS56711.1| YHL004W [Saccharomyces cerevisiae] [NCBI NR]
  • gi|417730|sp|P32902.1|RT04_YEAST RecName: Full=37S ribosomal protein MRP4, mitochondrial; Flags: Precursor [NCBI NR]
  • pir||A42115 ribosomal protein S2, mitochondrial - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|171982|gb|AAA34793.1| ribosomal protein [Saccharomyces cerevisiae] [NCBI NR]
  • 37S ribosomal protein MRP4, mitochondrial OS=Saccharomyces cerevisiae GN=MRP4 PE=1 SV=1 [Swiss-Prot]
  • MRP4 Mitochondrial ribosomal protein, small subunit [mips]
  • Mitochondrial ribosomal protein of the small subunit [SGD]
  • MRP4, Chr VIII from 99213-100397 [yeast_orfs2]
  • Chr VIII from 99213-100397 [yeastorf3.fasta]
  • (P32902) Mitochondrial 40S ribosomal protein MRP4 [4932.FASTACCERV.txt]
  • MRP4 SGDID:S0000996, Chr VIII from 99214-100398, Verified ORF [yeastflysequest.fasta]
  • Mitochondrial ribosomal protein of the small subunit [Saccharomyces cerevisiae]gi|283203|pir||A42115 ribosomal protein S2, mitochondrial - yeast (Saccharomyces cerevisiae)gi|45270660|gb|AAS56711.1| YHL004W [Saccharomyces cerevisiae]gi|500819|gb|AAB6842 [nrdb_11152004_Chlamydomonas]
  • MRP4 SGDID:S000000996, Chr VIII from 99215-100399, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • Mitochondrial ribosomal protein of the small subunit; Mrp4p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • YHL004W [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Mrp4p: Mitochondrial ribosomal protein [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Mitochondrial 40S ribosomal protein MRP4 [nr-271106-contam.fasta]
  • ribosomal protein [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • 37S ribosomal protein MRP4, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRP4 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • MRP4 SGDID:S000000996, Chr VIII from 99219-100403, Genome Release 64-1-1, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [yeast-030211-contam.fasta]
  • MRP4 SGDID:S000000996, Chr VIII from 99219-100403, Genome Release 64-2-1, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [20141208_orf_trans.fasta]
  • TR3586|c0_g1_i1|g.2572 ORF TR3586|c0_g1_i1|g.2572 TR3586|c0_g1_i1|m.2572 type:complete len:395 (+) TR3586|c0_g1_i1:186-1370(+) [Y12_S_cerevisiae-Sep2015-contam.fasta]
  • TR5063|c0_g1_i1|g.3398 ORF TR5063|c0_g1_i1|g.3398 TR5063|c0_g1_i1|m.3398 type:complete len:395 (+) TR5063|c0_g1_i1:210-1394(+) [DBVPG6044_S_cerevisiae-Sep2015-contam.fasta]
  • YHL004W SGDID:S000000996, Chr VIII from 99219-100403, Genome Release 64-1-1, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
  • asmbl_8270|g.5811 ORF asmbl_8270|g.5811 asmbl_8270|m.5811 type:complete len:395 (+) asmbl_8270:186-1370(+) [Y12_Trinity_v2_2_0_PASA_6May2016-contam.fasta]
  • ID=asmbl_8134|g.4923 ORF ID=asmbl_8134|g.4923 ID=asmbl_8134|m.4923 type:complete len:395 (+) ID=asmbl_8134:210-1394(+) [DBVPG6044_quiverGenomes_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
  • ID=asmbl_8275|g.5038 ORF ID=asmbl_8275|g.5038 ID=asmbl_8275|m.5038 type:complete len:395 (+) ID=asmbl_8275:186-1370(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 394 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    mitochondrial small ribosomal subunit [IDALink to PubMed article][TASLink to PubMed article]
    Biological Process: translation [IDALink to PubMed article][TASLink to PubMed article]
    Molecular Function: structural constituent of ribosome [IDALink to PubMed article][TASLink to PubMed article]
    tRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRHVFARNF RRLSLLRNPS LTKRFQSSAS GAANTPNNND EVMLLQQKLL YDEIRSELKS  60
   61 LSQVPEDEIL PELKKSLEQD KLSDKEQQLE AELSDFFRNY ALLNKLFDSK TLDGQSSTTT 120
  121 AAATPTKPYP NLIPSANDKP YSSQELFLRQ LNHSMRTAKL GATISKVYYP HKDIFYPPLP 180
  181 ENITVESLMS AGVHLGQSTS LWRSSTQSYI YGEYKGIHII DLNQTLSYLK RAAKVVEGVS 240
  241 ESGGIILFLG TRQGQKRGLE EAAKKTHGYY VSTRWIPGTL TNSTEISGIW EKQEIDSNDN 300
  301 PTERALSPNE TSKQVKPDLL VVLNPTENRN ALLEAIKSRV PTIAIIDTDS EPSLVTYPIP 360
  361 GNDDSLRSVN FLLGVLARAG QRGLQNRLAR NNEK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) EHD3 FYV4 MRP1 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM28 RSM7
    View Details (MIPS) Mewes HW, et al. (2004) MRP1 MRP10 MRP13 MRP17 MRP2 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 PPE1 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 VAR1 YMR31
    View Details Krogan NJ, et al. (2006) CBF1 FYV4 MAM33 MRP1 MRP10 MRP17 MRP21 MRP4 MRP51 MRPL8 MRPS12 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS9 NAM9 NCL1 PET123 RIB4 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM28 RSM7 SVL3 SWS2 YDR124W YJR096W YKL151C YSP1
    View Details Gavin AC, et al. (2006) EHD3 MRP1 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS5 MRPS8 MRPS9 NAM9 PET123 RSM10 RSM19 RSM22 RSM23 RSM25 RSM27 RSM7
    View Details Gavin AC, et al. (2002) BEM2 CCM1 ECM16 EHD3 FYV4 GEP3 HSC82 MRP1 MRP10 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS5 MRPS8 MRPS9 NAM9 PAP2 PET123 PSD2 PUS7 RIX1 RSM10 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 TIF4631 UBP10 UTP20 UTP22
    View Details Qiu et al. (2008) EHD3 IMG1 IMG2 MAM33 MHR1 MNP1 MRP1 MRP10 MRP13 MRP17 MRP2 MRP20 MRP21 MRP4 MRP49 MRP51 MRP7 MRPL1 MRPL10 MRPL11 MRPL13 MRPL15 MRPL16 MRPL17 MRPL19 MRPL20 MRPL22 MRPL23 MRPL24 MRPL25 MRPL27 MRPL28 MRPL3 MRPL31 MRPL32 MRPL33 MRPL35 MRPL36 MRPL37 MRPL38 MRPL39 MRPL4 MRPL40 MRPL44 MRPL49 MRPL50 MRPL51 MRPL6 MRPL7 MRPL8 MRPL9 MRPS12 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 PPE1 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM28 RSM7 RTC6 SWS2 VAR1 YDR115W YML6 YMR31

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data MRP4 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] deduced N/A No confident structure predictions are available.
    2 View Details [129..394] PSI-BLAST 382.221849 Ribosomal protein S2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.68569821712377 bayes_pls_golite062009
  • structural molecule activity
    		•  9.23086340425923 bayes_pls_golite062009
  • binding
    		•  1.22050473722317 bayes_pls_golite062009
  • RNA binding
    		•  0.825542354503353 bayes_pls_golite062009
  • protein binding
    		•  0.594755004067504 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.588158477256084 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle