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View Structure Prediction Details

Protein: MRP4
Organism: Saccharomyces cerevisiae
Length: 394 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP4.

Description E-value Query
Range		 Subject
Range
gi|190405778 - gi|190405778|gb|EDV09045.1| mitochondrial ribosomal protein [Saccharomyces cerevisiae RM11-1a]
MRP4 - Mitochondrial ribosomal protein of the small subunit
RT04_YEAST - 37S ribosomal protein MRP4, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
 0.0 [1..394] [1..394]
RR2_SOLTU - 30S ribosomal protein S2, chloroplastic OS=Solanum tuberosum GN=rps2 PE=3 SV=1
RR2_NICSY - 30S ribosomal protein S2, chloroplastic OS=Nicotiana sylvestris GN=rps2 PE=3 SV=1
RR2_SOLBU - 30S ribosomal protein S2, chloroplastic OS=Solanum bulbocastanum GN=rps2 PE=3 SV=1
RR2_SOLLC - 30S ribosomal protein S2, chloroplastic OS=Solanum lycopersicum GN=rps2 PE=3 SV=1
RR2_TOBAC - 30S ribosomal protein S2, chloroplastic OS=Nicotiana tabacum GN=rps2 PE=3 SV=1
RR2_ATRBE - 30S ribosomal protein S2, chloroplastic OS=Atropa belladonna GN=rps2 PE=3 SV=1
 3.0E-75 [182..388] [7..233]
gi|25294462 - pir||AH2404 30S ribosomal protein S2 [imported] - Nostoc sp. (strain PCC 7120)
RS2_NOSS1 - 30S ribosomal protein S2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsB PE=3 SV=1
 7.0E-75 [183..388] [4..229]
gi|39573648 - gi|39573648|dbj|BAD04075.1| ribosomal protein subunit 2 [Cistanche salsa]
gi|17129592, gi|... - gi|39573646|dbj|BAD04074.1| ribosomal protein subunit 2 [Cistanche deserticola], gi|39573644|dbj|BAD...
 8.0E-75 [182..384] [7..229]
RS2_PEDAC - 30S ribosomal protein S2 OS=Pediococcus acidilactici GN=rpsB PE=3 SV=1
 9.0E-75 [183..387] [4..228]
gi|17129594 - gi|17129594|dbj|BAB72235.1| ribosomal protein subunit 2 [Cistanche salsa]
 9.0E-75 [182..384] [7..229]
RS2_BACHD - 30S ribosomal protein S2 OS=Bacillus halodurans GN=rpsB PE=3 SV=1
RS2_BACHD - 30S ribosomal protein S2 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9...
 1.0E-74 [183..387] [4..228]
RR2_CYAPA - Cyanelle 30S ribosomal protein S2 OS=Cyanophora paradoxa GN=rps2 PE=3 SV=1
 4.0E-74 [183..389] [4..230]
RS2_SYNY3 - 30S ribosomal protein S2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpsB PE=3 SV=1
gi|7440111 - pir||S75586 ribosomal protein S2 - Synechocystis sp. (strain PCC 6803)
RS2_SYNY3 - 30S ribosomal protein S2 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rpsB PE=3 SV=1
 1.0E-73 [183..386] [4..227]

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Predicted Domain #1
Region A:
Residues: [1-128] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRHVFARNF RRLSLLRNPS LTKRFQSSAS GAANTPNNND EVMLLQQKLL YDEIRSELKS  60
   61 LSQVPEDEIL PELKKSLEQD KLSDKEQQLE AELSDFFRNY ALLNKLFDSK TLDGQSSTTT 120
  121 AAATPTKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-394] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPNLIPSAND KPYSSQELFL RQLNHSMRTA KLGATISKVY YPHKDIFYPP LPENITVESL  60
   61 MSAGVHLGQS TSLWRSSTQS YIYGEYKGIH IIDLNQTLSY LKRAAKVVEG VSESGGIILF 120
  121 LGTRQGQKRG LEEAAKKTHG YYVSTRWIPG TLTNSTEISG IWEKQEIDSN DNPTERALSP 180
  181 NETSKQVKPD LLVVLNPTEN RNALLEAIKS RVPTIAIIDT DSEPSLVTYP IPGNDDSLRS 240
  241 VNFLLGVLAR AGQRGLQNRL ARNNEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 382.221849
Match: 1fjgB_
Description: Ribosomal protein S2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.68569821712377 bayes_pls_golite062009
structural molecule activity 9.23086340425923 bayes_pls_golite062009
binding 1.22050473722317 bayes_pls_golite062009
RNA binding 0.825542354503353 bayes_pls_golite062009
protein binding 0.594755004067504 bayes_pls_golite062009
nucleic acid binding 0.588158477256084 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle