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Protein Overview: SWP82

General Information:
Name(s) found: SWP82 / YFL049W [SGD]
Description(s) found:
Found 25 descriptions.
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  • Member of the SWI/SNF chromatin remodeling complex in which it plays an as yet unidentified role; has identifiable counterparts in closely related yeast species; abundantly expressed in many growth conditions; paralog of Npl6p [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 623 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    SWI/SNF complex [IPILink to PubMed article]
    Biological Process: chromatin remodeling [ICLink to PubMed article]
    ER-associated protein catabolic process [IMPLink to PubMed article]
    regulation of transcription [ICLink to PubMed article]
    Molecular Function: transcription activator activity [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGEDEGNTV LEKGNNPSVK QGEVGAVFIV PKILIREHER VILKQILQIL DQDELVQPPL  60
   61 DKFPYKKLEL PKYIDELKTR DATNTSYKMI QLDAYGEKKV GSNGELFGGR HYLFNTFTFT 120
  121 AHMGVLLVLL QDVIKVLYQS NATHDEDEFI VQHDQILVME TSEEQTKFLA KNGVIPEESK 180
  181 GSFKYITARS AFVEFGASVI AGGQRIVDDY WESLAKKQNL SSHQRVFKLS TNLISKISLL 240
  241 RPSFQNNRIS NANEISANTN NTCTISTSKF ESQYPIVTEQ PSAEIREAYI ENFAKGEHIS 300
  301 AIVPGQSISG TLELSAQFRV PRYHSKNSFQ QALQMKAMDI PIGRHEELLA QYESQAPDGS 360
  361 ASISLPNHIP SVNPSNKPIK RMLSSILDIN VSSSKNKKSE ENEMIKPMNK GQHKNNTSLN 420
  421 INGWKFESLP LKSAENSGKQ QYYRGLPLYE KNTLLERLKQ LTPNEIKELE HLHDAVFVNT 480
  481 GLQNVRKVRT KKWKKYWQYK AGIPIGLKRS QLDEFKNKYL KDVLAQTSVT TNFNEITNTD 540
  541 ETITTKRVPN PNFLGNCNIK DFKPPYIYSH VNKVPQNVAG DKTAVKLDTE VKNTNANPVV 600
  601 ATDPVAAKPD NLANFSNEVA MNN

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) ARP7 ARP9 SNF12 SNF2 SNF5 SNF6 SWI1 SWI3 SWP82
    View Details Krogan NJ, et al. (2006) SNF12 SNF2 SNF5 SNF6 SWI1 SWI3 SWP82
    View Details Gavin AC, et al. (2002) ARP9 BEM2 DIM1 ENP1 HRR25 LTV1 NOB1 PNO1 RIO2 RRP12 SNF12 SNF2 SNF5 SNF6 SWI1 SWI3 SWP82 TSR1 VPS1 YGR054W
    View Details Qiu et al. (2008) ARP7 ARP9 RTT102 SNF11 SNF12 SNF5 SNF6 SWP82 TAF14

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #21 Asynchronous Prep2-IMAC Phosphopeptide enrichment A1 Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen IGO1 SWP82 1 Unpublished Fields Lab Data
    View Screen YOR203W SWP82 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data SWP82 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..240] MSA 2.00495 View MSA. No confident structure predictions are available.
    2 View Details [241..623] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle