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Protein Overview: YMR086W

General Information:
Name(s) found: YMR086W [SGD]
Description(s) found:
Found 25 descriptions.
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  • Protein of unknown function that may interact with ribosomes, based on co-purification experiments; GFP-fusion protein localizes to the cell periphery; possible component of the eisosome; expression is repressed by cAMP [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 960 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    ribosome [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRRRTTAPE MEQADPTAVA AAASIGKLLM KKGNQSDNEQ RPTYRSASMT NLRKPSAPKR  60
   61 MSSISSISSE SRRSDGKGRP GKINSLTQRS SMGKGDSLNS PLTKEPQHKT RSHNRTSSLP 120
  121 NQRGQQSRNS SGLQRQKSKT HQRISYDEAQ RTFKDFGGPQ ARGILTGQHR TENPSGSIPL 180
  181 RTTRKYIPGP NGLVAIEVPV EKPSNANTSK LLRRSNSAHS ALNARNGSLL RKKVSQESLH 240
  241 SQPKKTSSLG NTSSTQAKKG QKAVQERNLA KKHPINSNVP LIETQVREET DQELKLDNSN 300
  301 SSESETVVNS ENNLEKPSSL NIEKDDLSKL IHENIELESF IEEKGKEKPL NSDQEDVFIS 360
  361 EKTVKGDVQW PKNNRQASTL EKTFNYDNEE KREGNKPVAE HPLPEAEVDD KSVEQLNNIS 420
  421 SSGSYSAQGS VENSKPENGN KNLENDTTSS PTQDLDEKSR SIEEKDTLEG TESSKKVEKP 480
  481 DNCCEKISGA NTSSKKGNVG DTKDEFFDTV EESDQKTSKS NSSKNTDHSN QTEPTPSLAQ 540
  541 YLRTSNTYLS RKNQSKQAEQ EKFHKPEAPM VPVTKVVTPI KSALKKSSGS SNHDSSMYSD 600
  601 NSPANGAYLS LTTAENTRLN AQMTMSDSVS RRASLKRSSI KRPQSVGQFR SIRSNSPSPP 660
  661 EKINNKRHSA IPLGTPEKGK PKRNSVMASL SKNSQQIQEP ASVYESNGPN KPKNQINKNI 720
  721 KRGSQIAQNN KPSTKDMNSI LYPKEPPPRK SSFEKTRSNE SHLGFKKLSL RNGNFEEALS 780
  781 ESYNGQASQN STNVNRTDTA QEFFKYLGHS SRFADSDSED ESQFFNQGPS KYNTETEGNK 840
  841 TSGNKNSNGG NGAFSLFKSK SKQKENNVVS PGVSSPNHTT TDPAITSKKV DKKFSGLSLR 900
  901 AASEAEPAKN SNPSMTNRLR FSSNPENGES RLPQAQEVSV TKEKKGSFGK KLKKIFGRKK 960
  961

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) LSP1 PIL1 YMR086W
    View Details Krogan NJ, et al. (2006) AEP3 CDC20 FAB1 FOL2 GZF3 LSP1 NOP13 PIL1 PKH1 PRP16 PSK2 RGC1 RPL9B YLR179C YMR086W YTA6
    View Details Ho Y, et al. (2002) SEC7 SIP2 SNF1 SNF4 YMR086W

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YMR086W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..70] ab initio 12.5 No description for 1l8mA was found.
    2 View Details [71..416] ab initio 7.18 No description for 1g9uA was found.
    3 View Details [417..474] deduced N/A No confident structure predictions are available.
    4 View Details [475..751] MSA 8.218997 View MSA. No confident structure predictions are available.
    5 View Details [752..960] MSA 4.10597 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle