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Protein Overview: SPT6

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
View Run None Entered #17 Mitotic Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen RAD51 SPT6 1 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SPT6 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..336] PSI-BLAST 31.0 Heavy meromyosin subfragment
2 View Details [337..658] MSA 8.534997 View MSA. No confident structure predictions are available.
3 View Details [659..870] deduced N/A No confident structure predictions are available.
4 View Details [871..1001] MSA 1.104997 View MSA. No confident structure predictions are available.
5 View Details [1002..1114] deduced N/A No confident structure predictions are available.
6 View Details [1115..1222] PSI-BLAST 14.39794 S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase
7 View Details [1223..1374] ORFEUS 7.21 Phosphatidylinositol 3-kinase, p85-alpha subunit
8 View Details [1375..1451] MSA 1.016979 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • nucleic acid binding
  • 3.95080521324016 bayes_pls_golite062009
  • DNA binding
  • 3.71771169141041 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 2.90653390639682 bayes_pls_golite062009
  • binding
  • 2.85946414867169 bayes_pls_golite062009
  • telomeric DNA binding
  • 2.51555240517937 bayes_pls_golite062009
  • single-stranded telomeric DNA binding
  • 2.42617682290608 bayes_pls_golite062009
  • structural constituent of ribosome
  • 2.13063800565247 bayes_pls_golite062009
  • transcription regulator activity
  • 2.10110937001387 bayes_pls_golite062009
  • RNA binding
  • 2.07864328706376 bayes_pls_golite062009
  • structural molecule activity
  • 1.9177190829469 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.81524862921454 bayes_pls_golite062009
  • single-stranded DNA binding
  • 1.62996999055328 bayes_pls_golite062009
  • transcription repressor activity
  • 1.30343463892105 bayes_pls_golite062009
  • excinuclease ABC activity
  • 1.24466762466323 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 1.19766815287926 bayes_pls_golite062009
  • RNA polymerase activity
  • 1.19766815287926 bayes_pls_golite062009
  • ribonuclease activity
  • 1.19236946227657 bayes_pls_golite062009
  • transcription factor activity
  • 1.14242112812892 bayes_pls_golite062009
  • endonuclease activity
  • 0.991569665925888 bayes_pls_golite062009
  • damaged DNA binding
  • 0.95191912850966 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.85691075793641 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
  • 0.708753843279937 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 0.598360955770972 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.583085644017496 bayes_pls_golite062009
  • nuclease activity
  • 0.57381531077345 bayes_pls_golite062009
  • protein binding
  • 0.420735403363425 bayes_pls_golite062009
  • translation regulator activity
  • 0.31332179848255 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.263197317040851 bayes_pls_golite062009
  • deoxyribonuclease activity
  • 0.24906263529692 bayes_pls_golite062009
  • translation initiation factor activity
  • 0.2080607201312 bayes_pls_golite062009
  • chromatin binding
  • 0.19409870825073 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 0.125256208482441 bayes_pls_golite062009
  • telomerase inhibitor activity
  • 0.111973370145519 bayes_pls_golite062009
  • exoribonuclease activity
  • 0.109774918833391 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
  • 0.09423425042945 bayes_pls_golite062009
  • DNA polymerase activity
  • 0.0189279348688405 bayes_pls_golite062009
  • endoribonuclease activity
  • 0.016619833072142 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
  • 3.01525273025469 bayes_pls_golite062009
  • transcription regulator activity
  • 2.33050919783116 bayes_pls_golite062009
  • nucleic acid binding
  • 2.10577358908602 bayes_pls_golite062009
  • protein binding
  • 1.97939552458783 bayes_pls_golite062009
  • DNA binding
  • 1.9368694231327 bayes_pls_golite062009
  • transcription factor activity
  • 1.23187486844263 bayes_pls_golite062009
  • molecular adaptor activity
  • 0.136743230957381 bayes_pls_golite062009
  • SH3/SH2 adaptor activity
  • 0.0218958138395108 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle