Protein Overview: YDR239C

General Information:
Name(s) found:	YDR239C [SGD]
Description(s) found: SHOW ONLY BEST	gi\|817825\|emb\|CAA89725.1\| unknown [Saccharomyces cerevisiae] [NCBI NR] gi\|74676349\|sp\|Q03780.1\|YD239_YEAST RecName: Full=Uncharacterized protein YDR239C [NCBI NR] gi\|6320445\|ref\|NP_010525.1\| Protein of unknown function that may interact with ribosomes, based on co-purification experiments; Ydr239cp [Saccharomyces cerevisiae] [NCBI NR] gi\|51830251\|gb\|AAU09699.1\| YDR239C [Saccharomyces cerevisiae] [NCBI NR] pir\|\|S54535 hypothetical protein YDR239c - yeast (Saccharomyces cerevisiae) [NCBI NR] Uncharacterized protein YDR239C OS=Saccharomyces cerevisiae GN=YDR239C PE=1 SV=1 [Swiss-Prot] Protein of unknown function localised to cytoplasm [mips] Protein of unknown function that may interact with ribosomes, based on co-purification experiments [SGD] YDR239C, Chr IV from 941048-943411, reverse complement [yeast_orfs2] Chr IV from 941048-943411, reverse complement [yeastorf3.fasta] Chr IV from 943411-941048, reverse complement [yeastorf5.fasta] >Q03780 (Q03780) Hypothetical protein [4932.FASTACCERV.txt] YDR239C SGDID:S0002647, Chr IV from 943412-941049, reverse complement, Uncharacterized ORF [yeastflysequest.fasta] YDR239C SGDID:S0002647, Chr IV from 943414-941051, reverse complement, Uncharacterized ORF [10112005cervSGD.fasta] Ydr239cp [Saccharomyces cerevisiae]gi\|51830251\|gb\|AAU09699.1\| YDR239C [Saccharomyces cerevisiae]gi\|817825\|emb\|CAA89725.1\| unknown [Saccharomyces cerevisiae]gi\|1078497\|pir\|\|S54535 hypothetical protein YDR239c - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas] (Q03780) Hypothetical protein (YDR239C) [cerv4932.FASTAC] YDR239C SGDID:S000002647, Chr IV from 943414-941051, reverse complement, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] YDR239C SGDID:S000002647, Chr IV from 943416-941053, reverse complement, Uncharacterized ORF, "Hypothetical protein" [yeast-contam.fasta] YDR239C SGDID:S000002647, Chr IV from 943417-941054, reverse complement, Verified ORF, "Protein of unknown function that may interact with ribosomes, based on co-purification experiments" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta] unknown [Saccharomyces cerevisiae] [nr-271106-contam.fasta] hypothetical protein; Ydr239cp [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Uncharacterized protein YDR239C [nr-271106-contam.fasta] YDR239C [Saccharomyces cerevisiae] [nr-271106-contam.fasta] [chemostatdb.fasta] Uncharacterized protein YDR239C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR239C PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YDR239C SGDID:S000002647, Chr IV from 943420-941057, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein of unknown function that may interact with ribosomes, based on co-purification experiments" [yeast-030211-contam.fasta] YDR239C SGDID:S000002647, Chr IV from 943420-941057, Genome Release 64-2-1, reverse complement, Verified ORF, "Protein of unknown function; may interact with ribosomes, based on co-purification experiments" [20141208_orf_trans.fasta]
Organism:	Saccharomyces cerevisiae
Length:	787 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IDA] ribosome [IDA]
Biological Process:	biological_process [ND]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDGFSNNKG KRRSFFRFGS ESKNNDSEKS VRKPSVPSTI KKSTNIARTS TAETSAPDIP  60
   61 PRSPNRNAHS RSHSIQAPLQ KETLKNTNPF LNAEDTLGDS LELTQSKEAS GNDHKGIEYL 120
  121 QENNIIGQRT NPFTTSANSN AHFSKIKRSR PPPPPMDMKS ITTSISNNTT KEEIESNNDS 180
  181 ERDSIAISST HNQHRRQRSE AEKLVDDIEN YINEHKVSSG SSLSLDTSEN SDTKASQDKL 240
  241 PVDVMEAPIL RNVSAESSLS YVKPLIVDNE EVNKASNGNL VQSDHLKEFS SNLDDGDDKF 300
  301 SFSTSASGKS TKSLQQVSKD ESSGFKAAHF DFAYKSNEHL GSDGSIASAR KPLRITNEID 360
  361 SGSSNEDDDD GLQEKGFVDS ESKAFINYAS DQGSSIKNDV STQEPELPSH RRIFRVVNED 420
  421 RPSFYLNSVN DTGSLTDKHS FDTASSGEYD AKSNFSSQSG LSISKGSKST VLAALDSNGN 480
  481 TKSSNKTSEL NSLNSISESL VPAAHSFNEH TVTIPATVDL PNPVHDAPSE RSVKCSPLTS 540
  541 VVSNKSEKSV PLVSSYVEEL RLKYYKTSNF LQAPPNLPVA LKQKNNLIQP KNIKVKLRTS 600
  601 SKQIGIKHGK VKQKLLALET RNEESDGTAT GLKNKINVDH TKEFHKLLGK ENETGSISKK 660
  661 EGTDAEQAED YLKDIPGDEA YNSDDIMAPL REKRGQNGSV DSVSRSNTVV SYYTRSQNRM 720
  721 RSGTLDNDYV NRQKLPTHIS LQDYRDANAR SNISRQDSVS TTNSDVVDLS YSLGHGLRVA 780
  781 NPDSDPE

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Krogan NJ, et al. (2006)		ARB1 BUD9 FAL1 IZH3 TIF1, TIF2 YDR239C
View Details	Ho Y, et al. (2002)		ARP7 DIG1 DIG2 FET4 GFA1 GUS1 HAS1 HXT6 KSS1 MKT1 MSE1 NAP1 PHO84 PIM1 PMA1 PYC1 RGC1 RPA135 RPN10 SEN1 STE12 STE7 TEC1 UBI4 YDR239C YHR033W

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	MLP2	#14 Mitotic Prep2-TiO2 Flowthrough	Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	MEC3	YDR239C	1	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	YDR239C	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..787]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2