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View Structure Prediction Details

Protein: YDR239C
Organism: Saccharomyces cerevisiae
Length: 787 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR239C.

Description E-value Query
Range
Subject
Range
YDR239C - Protein of unknown function that may interact with ribosomes, based on co-purification experiments
YD239_YEAST - Uncharacterized protein YDR239C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR239C ...
0.0 [1..787] [1..787]

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Predicted Domain #1
Region A:
Residues: [1-787]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDGFSNNKG KRRSFFRFGS ESKNNDSEKS VRKPSVPSTI KKSTNIARTS TAETSAPDIP  60
   61 PRSPNRNAHS RSHSIQAPLQ KETLKNTNPF LNAEDTLGDS LELTQSKEAS GNDHKGIEYL 120
  121 QENNIIGQRT NPFTTSANSN AHFSKIKRSR PPPPPMDMKS ITTSISNNTT KEEIESNNDS 180
  181 ERDSIAISST HNQHRRQRSE AEKLVDDIEN YINEHKVSSG SSLSLDTSEN SDTKASQDKL 240
  241 PVDVMEAPIL RNVSAESSLS YVKPLIVDNE EVNKASNGNL VQSDHLKEFS SNLDDGDDKF 300
  301 SFSTSASGKS TKSLQQVSKD ESSGFKAAHF DFAYKSNEHL GSDGSIASAR KPLRITNEID 360
  361 SGSSNEDDDD GLQEKGFVDS ESKAFINYAS DQGSSIKNDV STQEPELPSH RRIFRVVNED 420
  421 RPSFYLNSVN DTGSLTDKHS FDTASSGEYD AKSNFSSQSG LSISKGSKST VLAALDSNGN 480
  481 TKSSNKTSEL NSLNSISESL VPAAHSFNEH TVTIPATVDL PNPVHDAPSE RSVKCSPLTS 540
  541 VVSNKSEKSV PLVSSYVEEL RLKYYKTSNF LQAPPNLPVA LKQKNNLIQP KNIKVKLRTS 600
  601 SKQIGIKHGK VKQKLLALET RNEESDGTAT GLKNKINVDH TKEFHKLLGK ENETGSISKK 660
  661 EGTDAEQAED YLKDIPGDEA YNSDDIMAPL REKRGQNGSV DSVSRSNTVV SYYTRSQNRM 720
  721 RSGTLDNDYV NRQKLPTHIS LQDYRDANAR SNISRQDSVS TTNSDVVDLS YSLGHGLRVA 780
  781 NPDSDPE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle