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Protein Overview: YDR261C-D

General Information:
Name(s) found: YDR261C-D [SGD]
Description(s) found:
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  • gi|7839160|ref|NP_058148.1| Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional; Ydr261c-dp [Saccharomyces cerevisiae] [NCBI NR]
  • gi|74627234|sp|Q07793.2|YD13B_YEAST RecName: Full=Transposon Ty1-DR4 Gag-Pol polyprotein; AltName: Full=Gag-Pol-p199; AltName: Full=Transposon Ty1 TYA-TYB polyprotein; AltName: Full=TY1A-TY1B; AltName: Full=p190; Contains: RecName: Full=Capsid protein; Sh [NCBI NR]
  • gi|2370462|emb|CAA98912.1| TY1B [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S70227 TyB protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty1.D [NCBI NR]
  • Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-DR4 PE=3 SV=2 [Swiss-Prot]
  • TY1B TY1B protein [mips]
  • - TY1B - TY1B protein [mips]
  • Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional [SGD]
  • YDR261C-D, Chr IV from 987525-988829,988831-992340, reverse complement [yeast_orfs2]
  • Chr IV from 987525-988829,988831-992340, reverse complement [yeastorf3.fasta]
  • Chr IV from 992340-991036,991034-987525, reverse complement [yeastorf5.fasta]
  • >Q07793 (Q07793) Hypothetical protein [4932.FASTACCERV.txt]
  • YDR261C-D SGDID:S0007395, Chr IV from 992341-991037,991035-987526, reverse complement, Ty ORF [yeastflysequest.fasta]
  • YDR261C-D SGDID:S0007395, Chr IV from 992343-991039,991037-987528, reverse complement, Ty ORF [10112005cervSGD.fasta]
  • TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition [Saccharomyces cerevisiae]gi|2370462|emb|CAA98912.1| TY1B [Saccharomyces cerevisiae]gi|2120059|pir||S70227 TyB protein - yea [nrdb_11152004_Chlamydomonas]
  • (Q07793) TY1B protein [cerv4932.FASTAC]
  • YDR261C-D SGDID:S000007395, Chr IV from 992343-991039,991037-987528, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YDR261C-D SGDID:S000007395, Chr IV from 992345-991041,991039-987530, reverse complement, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional" [yeast-contam.fasta]
  • YDR261C-D SGDID:S000007395, Chr IV from 992346-991042,991040-987531, reverse complement, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • TY1B [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional; Ydr261c-dp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR4 PE=3 SV=2 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YDR261C-D SGDID:S000007395, Chr IV from 991043-987534,992349-991045, Genome Release 64-1-1, reverse complement, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional" [yeast-030211-contam.fasta]
  • YDR261C-D SGDID:S000007395, Chr IV from 991043-987534,992349-991045, Genome Release 64-2-1, reverse complement, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional" [20141208_orf_trans.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 1604 amino acids

    Gene Ontology:
    Cellular Component: retrotransposon nucleocapsid [ISSLink to PubMed article]
    Biological Process: transposition, RNA-mediated [ISSLink to PubMed article]
    Molecular Function: DNA-directed DNA polymerase activity [ISSLink to PubMed article]
    RNA-directed DNA polymerase activity [ISSLink to PubMed article]
    RNA binding [ISSLink to PubMed article]
    protein binding [ISSLink to PubMed article]
    ribonuclease activity [ISSLink to PubMed article]
    peptidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPND 180
  181 FPNWVKTYIK FLQNSNLGGI IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI 240
  241 LSVDYTDIMK ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN 300
  301 GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ QGSRNSKPNY 360
  361 RRNPSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA HNVSTSNNSP STDNDSISKS 420
  421 TTEPIQLNNK HDLHLGQKLT ESTVNHTNHS DDELPGHLLL DSGASRTLIR SAHHIHSASS 480
  481 NPDINVVDAQ KRNIPINAIG DLQFHFQDNT KTSIKVLHTP NIAYDLLSLN ELAAVDITAC 540
  541 FTKNVLERSD GTVLAPIVKY GDFYWVSKKY LLPSNISVPT INNVHTSEST RKYPYPFIHR 600
  601 MLAHANAQTI RYSLKNNTIT YFNESDVDWS SAIDYQCPDC LIGKSTKHRH IKGSRLKYQN 660
  661 SYEPFQYLHT DIFGPVHNLP NSAPSYFISF TDETTKFRWV YPLHDRREDS ILDVFTTILA 720
  721 FIKNQFQASV LVIQMDRGSE YTNRTLHKFL EKNGITPCYT TTADSRAHGV AERLNRTLLD 780
  781 DCRTQLQCSG LPNHLWFSAI EFSTIVRNSL ASPKSKKSAR QHAGLAGLDI STLLPFGQPV 840
  841 IVNDHNPNSK IHPRGIPGYA LHPSRNSYGY IIYLPSLKKT VDTTNYVILQ GKESRLDQFN 900
  901 YDALTFDEDL NRLTASYHSF IASNEIQESN DLNIESDHDF QSDIELHPEQ PRNVLSKAVS 960
  961 PTDSTPPSTH TEDSKRVSKT NIRAPREVDP NISESNILPS KKRSSTPQIS NIESTGSGGM1020
 1021 HKLNVPLLAP MSQSNTHESS HASKSKDFRH SDSYSENETN HTNVPISSTG GTNNKTVPQI1080
 1081 SDQETEKRII HRSPSIDASP PENNSSHNIV PIKTPTTVSE QNTEESIIAD LPLPDLPPES1140
 1141 PTEFPDPFKE LPPINSRQTN SSLGGIGDSN AYTTINSKKR SLEDNETEIK VSRDTWNTKN1200
 1201 MRSLEPPRSK KRIHLIAAVK AVKSIKPIRT TLRYDEAITY NKDIKEKEKY IEAYHKEVNQ1260
 1261 LLKMKTWDTD EYYDRKEIDP KRVINSMFIF NKKRDGTHKA RFVARGDIQH PDTYDSGMQS1320
 1321 NTVHHYALMT SLSLALDNNY YITQLDISSA YLYADIKEEL YIRPPPHLGM NDKLIRLKKS1380
 1381 LYGLKQSGAN WYETIKSYLI QQCGMEEVRG WSCVFKNSQV TICLFVDDMV LFSKNLNSNK1440
 1441 RIIEKLKMQY DTKIINLGES DEEIQYDILG LEIKYQRGKY MKLGMENSLT EKIPKLNVPL1500
 1501 NPKGRKLSAP GQPGLYIDQD ELEIDEDEYK EKVHEMQKLI GLASYVGYKF RFDLLYYINT1560
 1561 LAQHILFPSR QVLDMTYELI QFMWDTRDKQ LIWHKHKTSS DKNI

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) YDR210C-C YDR210C-D YDR261C-D YGR027W-B YLR227W-B YNL284C-B YOR192C-B YOR343W-A YOR343W-B

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run TOR1 No Comments Reinke A, et al. (2004)
    View Run YNL313C No Comments Hazbun TR, et al. (2003)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run HIR2 No Comments Green EM, et al (2005)
    View Run DAD1 Dam1-765 complex purified from yeast with Dad1-TAP Shimogawa MM, et al. (2006)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RLF2 cac1: TAP-tagged Green EM, et al (2005)
    View Run DAD1 Dam1-765 complex purified from yeast with Dad1-TAP Shimogawa MM, et al. (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
    View Run VAM3 sample: hx4 Hao Xu, et al. (2010)
    View Run MLP2 #19 Asynchronous Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2 Keck JM, et al. (2011)
    View Run MLP2 #04 Alpha Factor Prep2 Keck JM, et al. (2011)
    View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #06 Alpha Factor Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #19b Asynchronous Prep1-new search criteria Keck JM, et al. (2011)
    View Run MLP2 #19a Asynchronous Prep1-new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle