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Protein Overview: YNL313C

General Information:
Name(s) found: YNL313C [SGD]
Description(s) found:
Found 25 descriptions.
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  • Essential protein of unknown function; fluorescent protein (GFP or YFP)-tagged protein localizes to cytoplasm and nucleus [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 904 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    cytoplasm [IDALink to PubMed articleLink to PubMed article]
    Biological Process: karyogamy involved in conjugation with cellular fusion [IPILink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLLHAKLL LSAEVESLKS GSFDQTYVKK AEHIISGESY QLVQQFVDKF KGKISISGEI  60
   61 STSSVIAALN DFLNVEVFKM GQENEMLFLA IALLQTFIQN NYTGPAARLK AISGLFGKTG 120
  121 IEIGAVNTAL SRSLAIMGQP AYEFMDDPLY LVLSLLLLER ITGQKSLFDV TPDQEIPLPI 180
  181 ISAESTPGLL AVAYWWWARA LLTQLSLIPE PSGFQASVAS AIYQSADLAY AITKELPESI 240
  241 HEDFKRELCA MYYLENVKCS LAINTEHLCL PSLTRAKKIT NFEFVMTGAR ATRTKYQQKA 300
  301 HAGLIILAKS FTFQNFALRT TSATPETFAL ESDLLLEKPH FESIADEPLD EQIYSKRQKV 360
  361 DLNEGYEEDK LLPLALRQEN IPKLLLDLNP NDQPTLSDYD NIQLLLRLYT IKNTTPAKDP 420
  421 LVEEELTALL SRILYQNGDK NWSIFARSLW ERSIIETTKA KTIERGLLQM QSLVEELDLK 480
  481 IKSKLVPSSS EINVASRLSY IHQLPFIPRW QLDATLAEKY MSLGILKSAV EIYERLGMAC 540
  541 ETALCYAAVG DEKKAEEILL QRINENDSDA RAYSILGDIK QDPSLWEKSW EIGKYVNAKN 600
  601 SLAKYYFNPP PKSGAQPNYS ATLKHLNDSL RQYPLSFETW YFYGCVGLQC GKMQIAAEAF 660
  661 TRCVSLDPYH ALSWSNLSAA YTKMDKLKEA YSCLKRAISC DAQKNWKIWE NYMLVAVKLN 720
  721 EWEDVLTACK QLVSIRRDKS GEGSIDLPII EKLVELLVTS EYPEEPQQLS YFQKSCTEFI 780
  781 CNTLPQVITT SARCWRLVAR VELWRKRPWA ALECHEKAYR AISHNPDLEV EEKVWNDTVD 840
  841 ACEDLVAAYE SLGEMEGKYG PGSLVCKDWK YKCRSTIKAL MSKGKGRWDD SPGWDRLVEA 900
  901 RSQI

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Hazbun TR, et al. (2003) GRS1 KAR2 TUB3 YNL313C
    View Details Krogan NJ, et al. (2006) HSP26 YNL313C
    View Details Gavin AC, et al. (2002) ACE2 ALT2 ATP2 BCK1 CDC11 DRE2 ECM30 ENP2 GFA1 IML1 KAP123 LYS12 MNL1 MTR4 MYO2 RGC1 RPT5 SEC3 TFP1 UBP15 YBL044W YJR098C YNL313C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run YNL313C No Comments Hazbun TR, et al. (2003)
    View Run YNL313C No Comments Hazbun TR, et al. (2003)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YNL313C and SPC42 Hazbun TR, et al. (2003)
    View Data YNL313C and SPC42 Unpublished Data
    View Data YNL313C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] deduced N/A No confident structure predictions are available.
    2 View Details [106..485] MSA 1.634996 View MSA. No confident structure predictions are available.
    3 View Details [486..563] PSI-BLAST 5.0 Clathrin heavy chain proximal leg segment
    4 View Details [564..685] PSI-BLAST 38.221849 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    5 View Details [686..760] PSI-BLAST 38.221849 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    6 View Details [761..832] PSI-BLAST 38.221849 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    7 View Details [833..904] PSI-BLAST 38.221849 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle