YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1006620, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	615 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1006620, gi|1....

Description	E-value	Query Range	Subject Range
gi\|18894131, gi\|... - gi\|18978305\|ref\|NP_579662.1\| putative sugar transport ATP-hydrolyzing [Pyrococcus furiosus DSM 3638]...	352.0	[0..248]	[614..1]
gi\|7442503 - pir\|\|H71241 probable multiple sugar-binding transport ATP-binding protein - Pyrococcus horikoshii gi\|3256580, gi\|1... - gi\|3256580\|dbj\|BAA29263.1\| 375aa long hypothetical multiple sugar-binding transport ATP-binding prot...	351.0	[0..245]	[615..1]
gi\|57641710, gi\|... - gi\|57641710\|ref\|YP_184188.1\| ABC-type maltdextrin transport system, ATPase component [Thermococcus k...	347.0	[0..248]	[614..1]
gi\|71672847, gi\|... - gi\|71673599\|ref\|ZP_00671347.1\| Binding-protein-dependent transport systems inner membrane component:...	343.0	[0..1]	[613..1]
gi\|55379027, gi\|... - gi\|55379027\|ref\|YP_136877.1\| sugar ABC transporter ATP-binding protein [Haloarcula marismortui ATCC ...	343.0	[0..246]	[615..8]
gi\|7442568, gi\|5... - pir\|\|B75207 multiple sugar-binding transport ATP-binding protein msmk PAB0123 - Pyrococcus abyssi (s... gi\|14520399, gi\|... - gi\|5457614\|emb\|CAB49105.1\| malK-2 ATP hydrolyzing subunit of the trehalose/maltose transport system ...	342.0	[0..248]	[614..1]
gi\|15644032, gi\|... - gi\|4981834\|gb\|AAD36351.1\|AE001783_2 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|7442605 - pir\|\|H72272 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	338.0	[0..244]	[615..1]
gi\|109157437 - gi\|109157437\|pdb\|2D62\|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding ...	338.0	[0..250]	[615..6]
gi\|114805627, gi... - gi\|167039694\|ref\|YP_001662679.1\| ABC transporter related [Thermoanaerobacter sp. X514], gi\|166853934... gi\|241884346, gi... - gi\|241903280\|ref\|ZP_04788006.1\| ABC transporter related protein [Thermoanaerobacter brockii subsp. f... gi\|242256473, gi... - gi\|242256473\|ref\|ZP_04801363.1\| ABC transporter related protein [Thermoanaerobacter sp. X513], gi\|24... gi\|256400268\|ref... - ABC transporter related protein [Thermoanaerobacter sp. X561] gi\|167036983, gi... - gi\|167036983\|ref\|YP_001664561.1\| ABC transporter related [Thermoanaerobacter pseudethanolicus ATCC 3...	338.0	[0..246]	[615..1]
gi\|86606497, gi\|... - gi\|86606497\|ref\|YP_475260.1\| molybdate ABC transporter, permease protein [Synechococcus sp. JA-3-3Ab... gi\|86606497 - gi\|86606497\|ref\|YP_475260.1\| molybdate ABC transporter, permease protein [Cyanobacteria bacterium Ye...	338.0	[0..2]	[612..3]

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Predicted Domain #1

Region A:
Residues: [1-491]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDLTPLWI SLKTAGLATV VTFILGIAAA YGMLGDRQPG KSLVEAVFIA PLILPPTVVG  60
   61 FLLLLLFGKN GPLGKILAQF DVTIVFTWYA AVITATVVSF PLMYKTTLGA FEQVDRHLLQ 120
  121 VAQTLGASRG EVFRRILLPL SLPGILAGTT LAFARSLGEF GATLMVAGNI PGQTQTIPMA 180
  181 IYFAVEAGAM GEAWLWVGII LVISLAGIMA ANIWQRRYED KIHNPQPQEH RLTVLFQNNG 240
  241 WENSSSHYPK LGEVEPGIQV NIQKQLAQFS LDVTFTTQGE TVGLLGASGS GKTMTLRCIA 300
  301 GIETPTQGRI ILNGRTLFDS QRNINVPSHE RKVGLVLQNY ALFPHLTVAQ NIAFGLRHLS 360
  361 PQRRSLRVEE QLTLVNLEKM GDRYPHQLSG GQQQRVALAR ALAPEPNVLL LDEPFSALDT 420
  421 HLRYELEKQL LKILSGYKGF TLFVSHNLEE AYRICQKLLV LSQGKLVATG DKQAIFDRPG 480
  481 SVTIAQLTGC K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.154902
Match:	2hydA
Description:	No description for 2hydA was found.

Predicted functions:

Term	Confidence	Notes
lipopolysaccharide transmembrane transporter activity	5.90177503313326	bayes_pls_golite062009
lipopolysaccharide-transporting ATPase activity	5.90177503313326	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	5.57844095962502	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	5.57813579764186	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	5.57813579764186	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	5.5689620139321	bayes_pls_golite062009
primary active transmembrane transporter activity	5.55992639965745	bayes_pls_golite062009
active transmembrane transporter activity	5.50005167063544	bayes_pls_golite062009
polysaccharide transmembrane transporter activity	5.26442752745523	bayes_pls_golite062009
ATPase activity, coupled	4.98276715440477	bayes_pls_golite062009
peptide transporter activity	4.7442815698413	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	4.71935767060308	bayes_pls_golite062009
ATPase activity	4.69795387297193	bayes_pls_golite062009
peptide-transporting ATPase activity	4.63590351019108	bayes_pls_golite062009
nucleoside-triphosphatase activity	4.45923622153365	bayes_pls_golite062009
pyrophosphatase activity	4.39781350157199	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	4.38133275795019	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	4.38085303582726	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	4.35344629015015	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	4.18204040663138	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	4.18204040663138	bayes_pls_golite062009
transporter activity	3.71239480053329	bayes_pls_golite062009
ion transmembrane transporter activity	3.35436118751376	bayes_pls_golite062009
phosphate transmembrane-transporting ATPase activity	3.20894563245332	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	3.19399273923292	bayes_pls_golite062009
hydrolase activity	3.14498892233323	bayes_pls_golite062009
phosphate transmembrane transporter activity	3.14373643903738	bayes_pls_golite062009
transmembrane transporter activity	3.13960906549884	bayes_pls_golite062009
anion transmembrane transporter activity	3.13913638619234	bayes_pls_golite062009
substrate-specific transporter activity	3.1318898376276	bayes_pls_golite062009
cation transmembrane transporter activity	3.08390071341252	bayes_pls_golite062009
iron ion transmembrane transporter activity	3.05511942104215	bayes_pls_golite062009
ATP binding	3.01346604299372	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.00745742755195	bayes_pls_golite062009
drug transmembrane transporter activity	2.97119034312001	bayes_pls_golite062009
adenyl ribonucleotide binding	2.96271391116269	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.9271291809464	bayes_pls_golite062009
adenyl nucleotide binding	2.91131545957759	bayes_pls_golite062009
branched-chain aliphatic amino acid transmembrane transporter activity	2.88795687640992	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.88476360771975	bayes_pls_golite062009
purine ribonucleotide binding	2.70262534541085	bayes_pls_golite062009
ribonucleotide binding	2.70178191749524	bayes_pls_golite062009
amine-transporting ATPase activity	2.69529191205818	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.67957846350199	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	2.67815672695824	bayes_pls_golite062009
purine nucleotide binding	2.6583477492092	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.63419811368692	bayes_pls_golite062009
nucleotide binding	2.62374702628143	bayes_pls_golite062009
oligopeptide-transporting ATPase activity	2.57684108006744	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.40292717311506	bayes_pls_golite062009
amine transmembrane transporter activity	2.29486577878686	bayes_pls_golite062009
	2.20174656498665	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.82177108193332	bayes_pls_golite062009
lipid transporter activity	1.74534601529986	bayes_pls_golite062009
potassium channel activity	1.68725597823541	bayes_pls_golite062009
amino acid transmembrane transporter activity	1.59627719545436	bayes_pls_golite062009
sugar transmembrane transporter activity	1.57734504779864	bayes_pls_golite062009
binding	1.40652776383476	bayes_pls_golite062009
carbohydrate-transporting ATPase activity	1.37859980472197	bayes_pls_golite062009
cation channel activity	1.33585529285301	bayes_pls_golite062009
carbohydrate-importing ATPase activity	1.27327946933978	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.23799860254751	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	1.21226071573355	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	1.1220946941463	bayes_pls_golite062009
voltage-gated cation channel activity	1.00384984515681	bayes_pls_golite062009
molecular transducer activity	0.952448314982579	bayes_pls_golite062009
signal transducer activity	0.952448314982579	bayes_pls_golite062009
voltage-gated ion channel activity	0.889208591820696	bayes_pls_golite062009
motor activity	0.87979065815418	bayes_pls_golite062009
voltage-gated channel activity	0.871525745291603	bayes_pls_golite062009
ion channel activity	0.848261056209476	bayes_pls_golite062009
GTPase activity	0.83849854735032	bayes_pls_golite062009
channel activity	0.806331380134838	bayes_pls_golite062009
passive transmembrane transporter activity	0.806331380134838	bayes_pls_golite062009
substrate-specific channel activity	0.799997700906738	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.767424210804186	bayes_pls_golite062009
gated channel activity	0.650050847753837	bayes_pls_golite062009
DNA-dependent ATPase activity	0.50574216781413	bayes_pls_golite062009
protein transporter activity	0.498432226280822	bayes_pls_golite062009
L-aspartate transmembrane transporter activity	0.483217496906356	bayes_pls_golite062009
glucoside transmembrane transporter activity	0.31429820040527	bayes_pls_golite062009
disaccharide transmembrane transporter activity	0.309333293394255	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	0.309333293394255	bayes_pls_golite062009
maltose transmembrane transporter activity	0.309333293394255	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	0.304521826432814	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	0.304521826432814	bayes_pls_golite062009
maltose-transporting ATPase activity	0.304521826432814	bayes_pls_golite062009
receptor activity	0.277332279568238	bayes_pls_golite062009
transmembrane receptor activity	0.243026482777117	bayes_pls_golite062009
neutral amino acid transmembrane transporter activity	0.227570438294493	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	0.219473333671469	bayes_pls_golite062009
protein binding	0.193768631623192	bayes_pls_golite062009
vitamin transporter activity	0.162731691286377	bayes_pls_golite062009
amino acid-transporting ATPase activity	0.147644650870465	bayes_pls_golite062009
cation-transporting ATPase activity	0.0536898657672154	bayes_pls_golite062009
oligopeptide transporter activity	0.0268154844251251	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [492-615]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYSPIQVIDR HTVRALDWQC TLQTTEPVSS DQTHIGIRAH QIRFLDAGDH HQSPVNTFPG  60
   61 WVVWTSETPH RMTVYLKLGI PPVDTDDYHL QAEVFKEKWQ ILRHCPQPWS IHLEPDRLML 120
  121 LTPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.30103
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: