| Protein: | RH28_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 789 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH28_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
419.0 | [0..168] | [789..6] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED 60
61 EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK AIQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [104-167] |
1 11 21 31 41 51
| | | | | |
1 HRPVPISINE EEEEEEEEED ASDAETDKQE EYLSEDDEAA EYKPEDATPK PFFSTVDGVS 60
61 FHAD
|
| Detection Method: | |
| Confidence: | 92.522879 |
| Match: | 2db3A |
| Description: | No description for 2db3A was found. |
|
Region A: Residues: [168-642] |
1 11 21 31 41 51
| | | | | |
1 TFMELNLSRP LLRACETLGY KKPTPIQAAC IPLALTGRDL CASAITGSGK TAAFALPTLE 60
61 RLLFRPKRVF ATRVLILTPT RELAVQIHSM IQNLAQFTDI KCGLIVGGLS VREQEVVLRS 120
121 MPDIVVATPG RMIDHLRNSM SVDLDDLAVL ILDEADRLLQ TGFATEITEL VRLCPKRRQT 180
181 MLFSATMTEE VKELVKLSLN KPLRLSADPS ARRPPGLTEE VVRIRRTREA NQEAVLLSLC 240
241 TRTFKSKVII FSGTKQAAHR LKILFGLAGL KAAELHGNLT QAQRLDSLEL FRKQEVDFLI 300
301 ATDVAARGLD IIGVQTVINY ACPREIDSYV HRVGRTARAG REGYAVTFVT DSDRSLLKVI 360
361 AKKVGSKLKS RVIPEQSIVK WSQIIDEMED QYSAVISAER DERALRKAEM EFAKAENMLE 420
421 HRDEIYARPK RTWFMTEKEK KLVAQAEKDS AGNPAGGELV SADRAEDLKM KEKRK
|
| Detection Method: | |
| Confidence: | 51.69897 |
| Match: | 1oywA |
| Description: | Structure of the RecQ Catalytic Core |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrogen ion transmembrane transporter activity | 9.07129841752891 | bayes_pls_golite062009 |
| hydrogen ion transporting ATP synthase activity, rotational mechanism | 8.58358908736821 | bayes_pls_golite062009 |
| translation initiation factor activity | 7.79457008386475 | bayes_pls_golite062009 |
| monovalent inorganic cation transmembrane transporter activity | 7.35625288284796 | bayes_pls_golite062009 |
| inorganic cation transmembrane transporter activity | 6.62734320850541 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 4.98637553020315 | bayes_pls_golite062009 |
| translation regulator activity | 4.94658029227343 | bayes_pls_golite062009 |
| 4.704140727858 | bayes_pls_golite062009 | |
| structural constituent of ribosome | 4.56509805974548 | bayes_pls_golite062009 |
| proton-transporting ATPase activity, rotational mechanism | 4.03326929098701 | bayes_pls_golite062009 |
| hydrolase activity | 3.63069754092699 | bayes_pls_golite062009 |
| structural molecule activity | 3.58406348799895 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.4837867129694 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 3.35436118751376 | bayes_pls_golite062009 |
| hydrogen-exporting ATPase activity, phosphorylative mechanism | 3.28373827150339 | bayes_pls_golite062009 |
| DNA clamp loader activity | 3.22518920754305 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 3.19273435123154 | bayes_pls_golite062009 |
| transporter activity | 3.10463051760206 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 3.08390071341252 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.95886887664984 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.95079405147356 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.87427509025394 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 2.85499564954033 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.85178667290149 | bayes_pls_golite062009 |
| motor activity | 2.79327761685782 | bayes_pls_golite062009 |
| microtubule motor activity | 2.74365461017633 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 2.61775212528604 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 2.61467977505707 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 2.57552435627908 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 2.57107347424517 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 2.57054427875021 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 2.50494515048649 | bayes_pls_golite062009 |
| ATPase activity, coupled | 2.43862163407966 | bayes_pls_golite062009 |
| ATPase activity | 2.39535714892224 | bayes_pls_golite062009 |
| cation-transporting ATPase activity | 2.31476707827367 | bayes_pls_golite062009 |
| RNA binding | 2.29590582680214 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 2.18118655708491 | bayes_pls_golite062009 |
| RNA cap binding | 2.17871969124431 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.91091452720653 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| RNA helicase activity | 1.42791449104435 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.40488517180956 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.39335733374328 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.36724390116598 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 1.3493704216639 | bayes_pls_golite062009 |
| DNA strand annealing activity | 1.30936388901516 | bayes_pls_golite062009 |
| telomeric DNA binding | 1.28350783207533 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| protein transporter activity | 1.25342367751911 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of ions | 1.23799860254751 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 1.23468617030519 | bayes_pls_golite062009 |
| voltage-gated channel activity | 1.216998547662 | bayes_pls_golite062009 |
| potassium channel activity | 1.20877745413881 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| tubulin binding | 0.979946830272106 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
| cation channel activity | 0.940476916156422 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.929901285538132 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
| nucleotide binding | 0.922442819194247 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.920987930180051 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.920926158369519 | bayes_pls_golite062009 |
| microtubule binding | 0.907162506177187 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| actin binding | 0.883285269827407 | bayes_pls_golite062009 |
| transcription repressor activity | 0.862685397469217 | bayes_pls_golite062009 |
| ion channel activity | 0.848261056209476 | bayes_pls_golite062009 |
| channel activity | 0.806331380134838 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.806331380134838 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.799997700906738 | bayes_pls_golite062009 |
| mRNA binding | 0.76699944561918 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 0.752795599437554 | bayes_pls_golite062009 |
| ribonuclease activity | 0.712344060953362 | bayes_pls_golite062009 |
| inorganic anion transmembrane transporter activity | 0.69784475011795 | bayes_pls_golite062009 |
| peptidase activity | 0.654073677905812 | bayes_pls_golite062009 |
| gated channel activity | 0.650050847753837 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| anion transmembrane-transporting ATPase activity | 0.563503770238611 | bayes_pls_golite062009 |
| GTPase activity | 0.437665353870877 | bayes_pls_golite062009 |
| anion transmembrane transporter activity | 0.43332053110728 | bayes_pls_golite062009 |
| snRNA binding | 0.418985924846052 | bayes_pls_golite062009 |
| ATP binding | 0.41092997612902 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.385813421701492 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.377870145186619 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 0.347363231484033 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.328170855722634 | bayes_pls_golite062009 |
| mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 0.296406132096546 | bayes_pls_golite062009 |
| GTP binding | 0.295705904888768 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.29028316917561 | bayes_pls_golite062009 |
| signal transducer activity | 0.286367085584159 | bayes_pls_golite062009 |
| molecular transducer activity | 0.286367085584159 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| di-, tri-valent inorganic cation transmembrane transporter activity | 0.226231702119567 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| microfilament motor activity | 0.10236059675512 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 0.0378638259240902 | bayes_pls_golite062009 |
| signal sequence binding | 6.53725193420218E-4 | bayes_pls_golite062009 |
|
Region A: Residues: [643-789] |
1 11 21 31 41 51
| | | | | |
1 REREKNLPRK KRRKLEAARE MLEDNEGEEE EEDEEGDEKR GRSRGKDKKK QETDKKGLTL 60
61 KDLGYMRAKA VKAKQRAIDS GKMERPKPDK KQSRSKPRNQ PRGEEMKDLF KSDMGEKKQG 120
121 RGGAAAAAKP RTKSKNSFKS KARYKRR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
