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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

SCF ubiquitin ligase complex 1.6642E-5 4 11 2 6292
cullin-RING ubiquitin ligase complex 2.7517E-5 4 14 2 6292
ubiquitin ligase complex 2.7138E-4 4 43 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 6.3596E-6 4 7 2 6292
protein ubiquitination during ubiquitin-dependent protein catabolic process 1.6642E-5 4 11 2 6292
modification-dependent protein catabolic process 5.8733E-5 4 156 3 6292
ubiquitin-dependent protein catabolic process 5.8733E-5 4 156 3 6292
proteolysis involved in cellular protein catabolic process 6.2187E-5 4 159 3 6292
modification-dependent macromolecule catabolic process 6.8238E-5 4 164 3 6292
cellular protein catabolic process 7.7347E-5 4 171 3 6292
proteolysis 1.0274E-4 4 188 3 6292
protein catabolic process 1.0438E-4 4 189 3 6292
G2/M transition of mitotic cell cycle 1.2238E-4 4 29 2 6292
mitotic cell cycle 2.5535E-4 4 255 3 6292
cellular macromolecule catabolic process 2.8637E-4 4 265 3 6292
G1/S transition of mitotic cell cycle 3.676E-4 4 50 2 6292
macromolecule catabolic process 3.9009E-4 4 294 3 6292
protein ubiquitination 6.2218E-4 4 65 2 6292
extrachromosomal circular DNA accumulation involved in replicative cell aging 6.3573E-4 4 1 1 6292
extrachromosomal rDNA circle accumulation involved in replicative cell aging 6.3573E-4 4 1 1 6292
protein autoubiquitination 6.3573E-4 4 1 1 6292
proteasomal protein catabolic process 7.0115E-4 4 69 2 6292
proteasomal ubiquitin-dependent protein catabolic process 7.0115E-4 4 69 2 6292
cell cycle phase 8.0953E-4 4 376 3 6292
cellular catabolic process 1.084E-3 4 415 3 6292
protein modification by small protein conjugation 1.0884E-3 4 86 2 6292
extrachromosomal circular DNA accumulation involved in cell aging 1.2712E-3 4 2 1 6292
interphase of mitotic cell cycle 1.3833E-3 4 97 2 6292
interphase 1.3833E-3 4 97 2 6292
cell cycle process 1.7695E-3 4 490 3 6292
catabolic process 1.834E-3 4 496 3 6292
protein modification by small protein conjugation or removal 1.9066E-3 4 114 2 6292
cell cycle 2.1676E-3 4 525 3 6292
mitochondria-nucleus signaling pathway 4.4437E-3 4 7 1 6292
regulation of transposition, DNA-mediated 5.0773E-3 4 8 1 6292
negative regulation of transposition, DNA-mediated 5.0773E-3 4 8 1 6292
transposition, DNA-mediated 5.0773E-3 4 8 1 6292
negative regulation of transposition 5.7106E-3 4 9 1 6292
regulation of transposition 5.7106E-3 4 9 1 6292
progressive alteration of chromatin involved in replicative cell aging 6.3436E-3 4 10 1 6292
progressive alteration of chromatin involved in cell aging 6.9763E-3 4 11 1 6292
negative regulation of DNA recombination 7.6087E-3 4 12 1 6292
regulation of DNA recombination 9.5041E-3 4 15 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ubiquitin-protein ligase activity 2.8023E-6 4 57 3 6292
small conjugating protein ligase activity 3.62E-6 4 62 3 6292
acid-amino acid ligase activity 5.4647E-6 4 71 3 6292
ligase activity, forming carbon-nitrogen bonds 1.2781E-5 4 94 3 6292
ligase activity 5.2211E-5 4 150 3 6292
DNA replication origin binding 8.2408E-3 4 13 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle