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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribonucleoprotein complex 7.018E-6 8 514 6 6292
small nucleolar ribonucleoprotein complex 7.7231E-5 8 72 3 6292
90S preribosome 1.9058E-4 8 17 2 6292
preribosome 7.7767E-4 8 34 2 6292
cytosolic small ribosomal subunit 9.7204E-4 8 38 2 6292
nucleolus 1.8378E-3 8 211 3 6292
non-membrane-bounded organelle 3.0487E-3 8 959 5 6292
intracellular non-membrane-bounded organelle 3.0487E-3 8 959 5 6292
small ribosomal subunit 3.5536E-3 8 73 2 6292
nuclear outer membrane 4.9014E-3 8 86 2 6292
macromolecular complex 5.1894E-3 8 1635 6 6292
nuclear membrane 6.2001E-3 8 97 2 6292
cytosolic ribosome 6.7076E-3 8 101 2 6292
cytosolic part 9.6731E-3 8 122 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 4.7479E-7 8 59 4 6292
rRNA processing 1.0741E-5 8 128 4 6292
rRNA metabolic process 1.4075E-5 8 137 4 6292
ribosome biogenesis 2.3852E-5 8 346 5 6292
ribonucleoprotein complex biogenesis 3.4865E-5 8 374 5 6292
ncRNA processing 8.3316E-5 8 215 4 6292
gene expression 9.518E-5 8 1283 7 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.0958E-4 8 13 2 6292
ncRNA metabolic process 1.6718E-4 8 257 4 6292
cellular component biogenesis 6.7771E-4 8 694 5 6292
translation 7.2474E-4 8 376 4 6292
RNA processing 7.546E-4 8 380 4 6292
regulation of translation 2.1802E-3 8 57 2 6292
posttranscriptional regulation of gene expression 2.4935E-3 8 61 2 6292
regulation of cellular protein metabolic process 3.0901E-3 8 68 2 6292
regulation of protein metabolic process 3.6499E-3 8 74 2 6292
cellular macromolecule metabolic process 4.5244E-3 8 2285 7 6292
macromolecule metabolic process 5.4192E-3 8 2349 7 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA helicase activity 1.1875E-3 8 42 2 6292
structural constituent of ribosome 1.8631E-3 8 212 3 6292
helicase activity 4.5722E-3 8 83 2 6292
nucleoside-triphosphatase activity 6.5162E-3 8 329 3 6292
structural molecule activity 7.087E-3 8 339 3 6292
hydrolase activity, acting on acid anhydrides 7.936E-3 8 353 3 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.936E-3 8 353 3 6292
pyrophosphatase activity 7.936E-3 8 353 3 6292

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Created and Maintained by: Michael Riffle