| General Information: |
|
| Name(s) found: |
PCF11 /
YDR228C
[SGD]
|
| Description(s) found:
Found 27 descriptions. SHOW ALL |
|
| Organism: | Saccharomyces cerevisiae |
| Length: | 626 amino acids |
Gene Ontology: |
|
| Cellular Component: |
mRNA cleavage factor complex
[IPI ]
|
| Biological Process: |
termination of RNA polymerase II transcription
[IDA]
mRNA polyadenylation [IDA ]
mRNA cleavage [IDA ]
|
| Molecular Function: |
protein binding
[IDA]
|
| Sequence: |
|
| Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51
| | | | | |
1 MDHDTEVIVK DFNSILEELT FNSRPIITTL TKLAEENISC AQYFVDAIES RIEKCMPKQK 60
61 LYAFYALDSI CKNVGSPYTI YFSRNLFNLY KRTYLLVDNT TRTKLINMFK LWLNPNDTGL 120
121 PLFEGSALEK IEQFLIKASA LHQKNLQAML PTPTVPLLLR DIDKLTCLTS ERLKNQPNDE 180
181 KLKMKLLVLS QLKQELKREK LTLNALKQVQ MQLRQVFSQD QQVLQERMRY HELQQQQQQQ 240
241 QQQQQQQQQQ QQQYHETKDM VGSYTQNSNS AIPLFGNNSD TTNQQNSLSS SLFGNISGVE 300
301 SFQEIEKKKS LNKINNLYAS LKAEGLIYTP PKESIVTLYK KLNGHSNYSL DSHEKQLMKN 360
361 LPKIPLLNDI LSDCKAYFAT VNIDVLNNPS LQLSEQTLLQ ENPIVQNNLI HLLYRSKPNK 420
421 CSVCGKRFGN SESEKLLQNE HLDWHFRINT RIKGSQNTAN TGISNSNLNT TTTRKNIQSR 480
481 NWYLSDSQWA AFKDDEITST KHKNDYTDPH ANKNIDKSAL NIHADENDEG SVDNTLGSDR 540
541 SNELEIRGKY VVVPETSQDM AFKCPICKET VTGVYDEESG EWVWKNTIEV NGKYFHSTCY 600
601 HETSQNSSKS NSGKVGLDDL KKLVTK |
| PUBLICATION | TOPOLOGY | COCOMPLEXED PROTEINS | |
| View Details | Riffle et al. (2010) (Unpublished Data) |
|
CFT2 CLP1 PAP1 PCF11 RNA14 RNA15 YSH1 |
| View Details | (MIPS) Mewes HW, et al. (2004) |
|
CLP1 HRP1 PCF11 RNA14 RNA15 |
| View Details | Gavin AC, et al. (2006) |
|
CLP1 PCF11 RNA14 RNA15 |
| View Details | Gavin AC, et al. (2002) |
|
ACT1 AIM31 CFT1 CFT2 CKA1 CLP1 ENO2 FIP1 GLC7 HHF1, HHF2 HTA1 MPE1 PAP1 PCF11 PFK1 PFS2 PTA1 PTI1 REF2 RNA14 RNA15 RSA3 SEC13 SEC31 SSA3 SSU72 SYC1 TAF6 TIF4632 TYE7 VID24 VMR1 VPS53 YCL046W YSH1 YTH1 |
| View Details | Qiu et al. (2008) |
|
PCF11 RNA14 RNA15 |
The following runs contain data for this protein:
| BAIT | COMMENTS | PUBLICATION | |
| View Run | No Comments | Hazbun TR, et al. (2003) |
SHOWING SINGLE HITS. [ Hide Single Hits ]
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| PROTEIN(S) | PUBLICATION | |
| View Data |
|
Huh WK, et al. (2003) |
Domains predicted:
| # | Region(s) | Method | Confidence | Match Description | |
| 1 | View Details | [1..117] |  |
5.03998 | View MSA. No confident structure predictions are available. |
| 2 | View Details | [118..460] | |
19.057997 | View MSA. No confident structure predictions are available. |
| 3 | View Details | [461..514] | |
N/A | No confident structure predictions are available. |
| 4 | View Details | [515..626] | |
1.013996 | View MSA. No confident structure predictions are available. |
Functions predicted (by domain):
| # | Gene Ontology predictions | ||||||||||||||||||||||||
| 1 |
|
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| 2 | No functions predicted. | ||||||||||||||||||||||||
| 3 | No functions predicted. | ||||||||||||||||||||||||
| 4 | No functions predicted. |
| Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
| Confidence of classification: | 0.99 |
Source: Reynolds et al. (2008)