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Protein Overview: YHR214C-B

General Information:
Name(s) found: YHR214C-B [SGD]
Description(s) found:
Found 26 descriptions.
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  • Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 1793 amino acids

    Gene Ontology:
    Cellular Component: retrotransposon nucleocapsid [ISSLink to PubMed article]
    Biological Process: transposition, RNA-mediated [ISSLink to PubMed article]
    Molecular Function: DNA-directed DNA polymerase activity [ISSLink to PubMed article]
    RNA-directed DNA polymerase activity [ISSLink to PubMed article]
    RNA binding [ISSLink to PubMed article]
    protein binding [ISSLink to PubMed article]
    ribonuclease activity [ISSLink to PubMed article]
    peptidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSNYP HISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA NSQQTTTPAS  60
   61 SAVPENLHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPND 180
  181 FPNWVKTYIK FLQNSNLGGI IPTVNGKPVP PMLTSPNDFP NWVKTYIKFL QNSNLGGIIP 240
  241 TVNGKPVRQI TDDELTFLYN TFQIFAPSQF LPTWVKDILS VDYTDIMKIL SKSIEKMQSD 300
  301 TQEANDIVTL ANLQYNGSTP ADAFETKVTN IIDRLNNNGI HINNKVACQL IMRGLSGEYK 360
  361 FLRYTRHRHL NMTVAELFLD IHAIYEEQQG SRNSKPNYRR NPSDEKNDSR SYTNTTKPKV 420
  421 IARNPQKTNN SKSKTARAHN VSTSNNSPST DNDSISKSTT EPIQLNNKHD LHLGQKLTES 480
  481 TVNHTNHSDD ELPGHLLLDS GASRTLIRSA HHIHSASSNP DINVVDAQKR NIPINAIGDL 540
  541 QFHFQDNTKT SIKVLHTPNI AYDLLSLNEL AAVDITACFT KNVLERSDGT VLAPIVKYGD 600
  601 FYWVSKKYLL PSNISVPTIN NVHTSESTRK YPYPFIHRML AHANAQTIRY SLKNNTITYF 660
  661 NESDVDWSSA IDYQCPDCLI GKSTKHRHIK GSRLKYQNSY EPFQYLHTDI FGPVHNLPKS 720
  721 APSYFISFTD ETTKFRWVYP LHDRREDSIL DVFTTILAFI KNQFQASVLV IQMDRGSEYT 780
  781 NRTLHKFLEK NGITPCYTTT ADSRAHGVAE RLNRTLLDDC RTQLQCSGLP NHLWFSAIEF 840
  841 STIVRNSLAS PKSKKSARQH AGLAGLDIST LLPFGQPVIV NDHNPNSKIH PRGIPGYALH 900
  901 PSRNSYGYII YLPSLKKTVD TTNYVILQGK ESRLDQFNYD ALTFDEDLNR LTASYHSFIA 960
  961 SNEIQQSNDL NIESDHDFQS DIELHPEQLR NVLSKAVSPT DSTPPSTHTE DSKRVSKTNI1020
 1021 RAPREVDPNI SESNILPSKK RSSTPQISDI ESTGSGGMHR LDVPLLAPMS QSNTHESSHA1080
 1081 SKSKDFRHSD SYSDNETNHT NVPISSTGGT NNKTVPQTSE QETEKRIIHR SPSIDTSSSE1140
 1141 SNSLHHVVPI KTSDTCPKEN TEESIIADLP LPDLPPEPPT ELSDSFKELP PINSHQTNSS1200
 1201 LGGIGDSNAY TTINSKKRSL EDNETEIKVS RDTWNTKNMR SLEPPRSKKR IHLIAAVKAV1260
 1261 KSIKPIRTTL RYDEAITYNK DIKEKEKYIQ AYHKEVNQLL MMKTWDTDRY YDRKEIDPKR1320
 1321 VINSMFIFNR KRDGTHKARF VARGDIQHPD TYDPGMQSNT VHHYALMTSL SLALDNNYYI1380
 1381 TQLDISSAYL YADIKEELYI RPPPHLGMND KLIRLKKSLY GLKQSGANWY ETIKSYLIKQ1440
 1441 CGMEEVRGWS CVFKNSQVTI CLFVDDMILF SKDLNANKKI ITTLKKQYDT KIINLGESDN1500
 1501 EIQYDILGLE IKYQRGKYMK LGMENSLTEK IPKLNVPLNP KGRKLSAPGQ PGLYIDQDEL1560
 1561 EIDEDEYKEK VHEMQKLIGL ASYVGYKFRF DLLYYINTLA QHILFPSRQV LDMTYELIQF1620
 1621 MWDTRDKQLI WHKNKPTEPD NKLVAISDAS YGNQPYYKSQ IGNIYLLNGK VIGGKSTKAS1680
 1681 LTCTSTTEAE IHAISESVPL LNNLSHLVQE LNKKPITKGL LTDSKSTISI IISNNEEKFR1740
 1741 NRFFGTKAMR LRDEVSGNHL HVCYIETKKN IADVMTKPLP IKTFKLLTNK WIH

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) YAR009C YBL005W-B YBR012W-B YCL019W YDR210C-D YER138C YER160C YHR214C-B YLR227W-B YML039W YML045W YMR045C YMR050C YOR343W-B

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run YNL313C No Comments Hazbun TR, et al. (2003)
    View Run TOR2 No Comments Reinke A, et al. (2004)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RLF2 cac1: TAP-tagged Green EM, et al (2005)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
    View Run MLP2 #26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2 Keck JM, et al. (2011)
    View Run MLP2 #04 Alpha Factor Prep2 Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle