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Protein Overview: CDC9

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run PAN1 No Comments Toshima J, et al (2006)
View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
View Run MLP2 #19 Asynchronous Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #19b Asynchronous Prep1-new search criteria Keck JM, et al. (2011)
View Run MLP2 #19a Asynchronous Prep1-new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data CDC9 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..143] ORFEUS 7.99 No description for 1ldvA was found.
2 View Details [144..330] ORFEUS 7.17 Lipovitellin-phosvitin complex, superhelical domain; Lipovitellin-phosvitin complex; beta-sheet shell regions
3 View Details [331..391] deduced N/A No confident structure predictions are available.
4 View Details [392..419]
[548..599]
PSI-BLAST 38.30103 ATP-dependent DNA ligase; ATP-dependent DNA ligase, N-terminal domain
5 View Details [420..547]
[600..755]
PSI-BLAST 38.30103 ATP-dependent DNA ligase; ATP-dependent DNA ligase, N-terminal domain

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • DNA ligase activity
  • 5.12640522664474 bayes_pls_golite062009
  • ligase activity, forming phosphoric ester bonds
  • 5.0464977640909 bayes_pls_golite062009
  • DNA ligase (ATP) activity
  • 3.18914513915107 bayes_pls_golite062009
  • DNA ligase (NAD+) activity
  • 3.1488483282989 bayes_pls_golite062009
  • ligase activity
  • 2.36807839237461 bayes_pls_golite062009
  • catalytic activity
  • 2.15370807854636 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 2.06695360101593 bayes_pls_golite062009
  • nucleic acid binding
  • 1.4725380374617 bayes_pls_golite062009
  • binding
  • 1.23714137231717 bayes_pls_golite062009
  • DNA binding
  • 1.1855473374207 bayes_pls_golite062009
  • protein binding
  • 0.0772495917382868 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.




    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle